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Snd1 Gene Detail
Summary
  • Symbol
    Snd1
  • Name
    staphylococcal nuclease and tudor domain containing 1
  • Synonyms
    p100 co-activator, Tudor-SN
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929266
    NCBI Gene: 56463
  • Gene Overview
    MyGene.info: SND1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:28480315-28935162 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 11.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2928 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929266
protein coding gene Chr6:28475139-28935162 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030511
protein coding gene Chr6:26209403-26681163 (+)
A/J MGP_AJ_G0030484
protein coding gene Chr6:25104012-25560142 (+)
AKR/J MGP_AKRJ_G0030411
protein coding gene Chr6:25936493-26400403 (+)
BALB/cJ MGP_BALBcJ_G0030494
protein coding gene Chr6:25270076-25720031 (+)
C3H/HeJ MGP_C3HHeJ_G0030207
protein coding gene Chr6:25923257-26399925 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030948
protein coding gene Chr6:27010253-27487542 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028159
protein coding gene Chr6:23332731-23776575 (+)
CAST/EiJ MGP_CASTEiJ_G0029609
protein coding gene Chr6:25727338-26186181 (+)
CBA/J MGP_CBAJ_G0030185
protein coding gene Chr6:27976783-28460037 (+)
DBA/2J MGP_DBA2J_G0030329
protein coding gene Chr6:25057838-25507694 (+)
FVB/NJ MGP_FVBNJ_G0030283
protein coding gene Chr6:24809529-25263163 (+)
LP/J MGP_LPJ_G0030416
protein coding gene Chr6:26353479-26818997 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030319
protein coding gene Chr6:30533756-31019768 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030978
protein coding gene Chr6:25811903-26263758 (+)
PWK/PhJ MGP_PWKPhJ_G0029323
protein coding gene Chr6:24586701-25033804 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029159
protein coding gene Chr6:25503118-25985320 (+)
WSB/EiJ MGP_WSBEiJ_G0029685
protein coding gene Chr6:25779745-26241793 (+)



Homology
more
  • Human Ortholog
    SND1, staphylococcal nuclease and tudor domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SND1, staphylococcal nuclease and tudor domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    p100, TDRD11, Tudor-SN
  • Links
    NCBI Gene ID: 27044
    neXtProt AC: NX_Q7KZF4
    UniProt: Q7KZF4

  • Chr Location
    7q32.1; chr7:127652119-128092607 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56463 NCBI Gene Model | MGI Sequence Detail 454848 C57BL/6J ±  kb
transcript NM_019776 RefSeq | MGI Sequence Detail 3482 C57BL/6  
polypeptide Q78PY7 UniProt | EBI | MGI Sequence Detail 910 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 14
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141543
References
more
  • Summaries
    All 40
    Developmental Gene Expression 4
    Gene Ontology 9
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:242582 Jariwala N, et al., Oncogenic Role of SND1 in Development and Progression of Hepatocellular Carcinoma. Cancer Res. 2017 Jun 15;77(12):3306-3316

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory