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Snd1 Gene Detail
Summary
  • Symbol
    Snd1
  • Name
    staphylococcal nuclease and tudor domain containing 1
  • Synonyms
    p100 co-activator, Tudor-SN
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929266
    NCBI Gene: 56463
  • Gene Overview
    MyGene.info: SND1
Location & Maps
more
  • Sequence Map
    Chr6:28475139-28935162 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      460024 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 11.99 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SND1, staphylococcal nuclease and tudor domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SND1, staphylococcal nuclease and tudor domain containing 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    p100, TDRD11, Tudor-SN
  • Links
    NCBI Gene ID: 27044
    neXtProt AC: NX_Q7KZF4

  • Chr Location
    7q31.3; chr7:127652119-128092607 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035791 VEGA Gene Model | MGI Sequence Detail 460024 C57BL/6J ±  kb
transcript OTTMUST00000091607 VEGA | MGI Sequence Detail 3482 Not Applicable  
polypeptide OTTMUSP00000050473 VEGA | MGI Sequence Detail 910 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2971 from dbSNP Build 142
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000015326 staphylococcal nuclease domain-containing protein 1
  • InterPro Domains
    IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN
    IPR016071 Staphylococcal nuclease (SNase-like), OB-fold
    IPR002071 Thermonuclease active site
    IPR002999 Tudor domain
Molecular
Reagents
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  • All nucleic 14
    cDNA 13
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141543
References
more
  • Summaries
    All 35
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 6
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:232146 Carlson HL, et al., LncRNA-HIT Functions as an Epigenetic Regulator of Chondrogenesis through Its Recruitment of p100/CBP Complexes. PLoS Genet. 2015 Dec;11(12):e1005680

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory