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Rnf138 Gene Detail
Summary
  • Symbol
    Rnf138
  • Name
    ring finger protein 138
  • Synonyms
    2410015A17Rik, 2810480D20Rik, Trif-d
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929211
    NCBI Gene: 56515
Location & Maps
more
  • Sequence Map
    Chr18:21001341-21028223 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      26883 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 11.73 cM, cytoband A2
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RNF138, ring finger protein 138
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RNF138, ring finger protein 138
    Orthology source: HGNC, HomoloGene
  • Synonyms
    hNARF, HSD-4, NARF, STRIN
  • Links
    NCBI Gene ID: 51444
    neXtProt AC: NX_Q8WVD3

  • Chr Location
    18q12.1; chr18:32091855-32131561 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024317 Ensembl Gene Model | MGI Sequence Detail 26883 C57BL/6J ±  kb
transcript ENSMUST00000052396 Ensembl | MGI Sequence Detail 3110 Not Applicable  
polypeptide ENSMUSP00000056641 Ensembl | MGI Sequence Detail 245 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    107 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000014084 E3 ubiquitin-protein ligase RNF138
  • EC
  • InterPro Domains
    IPR008598 Drought induced 19 protein type, zinc-binding domain
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
Molecular
Reagents
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  • All nucleic 61
    cDNA 61

    Microarray probesets 8
Other
Accession IDs
less
MGI:1914242, MGI:1920059
References
more
  • Summaries
    All 41
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory