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Copz1
Gene Detail
Symbol

Name
ID
Copz1
coatomer protein complex, subunit zeta 1
MGI:1929063
Synonyms
5930435A22Rik, D4Ertd360e, nonclathrin coat protein zeta1-COP
Feature Type
protein coding gene
Genetic Map
Chromosome 15
58.74 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:103272911-103299862 bp, + strand
From Ensembl annotation of GRCm38

  26952 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9366  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 zebrafish

HCOP human homology predictions: COPZ1
Protein SuperFamily: vesicle coat complex COPI, zeta subunit
Gene Tree: Copz1

Human
homologs
COPZ1, coatomer protein complex, subunit zeta 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 22818
neXtProt AC: NX_P61923

Human Synonyms: CGI-120, COPZ, HSPC181, zeta1-COP, zeta-COP

Human Chr (Location): 12q13.2-q13.3; chr12:54325090-54351851 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(25) : Gene trapped(25)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Copz1 interacts with 143 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process intracellular protein transport, intra-Golgi vesicle-mediated transport, ...
Component COPI vesicle coat, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(272)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase copz1 ; ZFIN copz1    NEW 
Molecular
reagents
All nucleic(274) Genomic(1) cDNA(272) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000060992 (Evidence)
Entrez Gene 56447 (Evidence)
UniGene 29473
DFCI TC1573149, TC1591643, TC1591939, TC1603996
DoTS DT.101397141, DT.101719408, DT.536935, DT.91282942, DT.94408198
NIA Mouse Gene Index U016739
Consensus CDS Project CCDS27901.1
International Mouse Phenotyping Consortium Status Copz1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060992 Ensembl Gene Model | MGI Sequence Detail 26952 C57BL/6J ±  kb
transcript ENSMUST00000100162 Ensembl | MGI Sequence Detail 1669 Not Applicable 
polypeptide ENSMUSP00000097738 Ensembl | MGI Sequence Detail 177 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(157 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022775 AP complex, mu/sigma subunit
InterPro IPR000804 Clathrin adaptor complex, small chain
InterPro IPR011012 Longin-like domain
Protein Ontology PR:000005747 coatomer subunit zeta-1
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:197389 Slater LH, et al., CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells. Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9932-7
All references(37)
Other
accession IDs
MGI:1196438, MGI:1915335, MGI:2145892

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory