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Copz1
Gene Detail
 Symbol
Name
ID
Copz1
coatomer protein complex, subunit zeta 1
MGI:1929063
Synonyms 5930435A22Rik, D4Ertd360e, nonclathrin coat protein zeta1-COP
Feature Type protein coding gene
Genetic Map
Chromosome 15
58.74 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:103272918-103299865 bp, + strand
From NCBI annotation of GRCm38

  26948 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9366  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 zebrafish

Protein SuperFamily: vesicle coat complex COPI, zeta subunit
Gene Tree: Copz1

Human
homologs
Human Homolog COPZ1, coatomer protein complex, subunit zeta 1
NCBI Gene ID 22818
neXtProt AC  NX_P61923
Human Synonyms  COPZ, HSPC181, zeta1-COP, zeta-COP
Human Chr (Location)  12q13.2-q13.3; chr12:54325090-54351851 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(25) : Gene trapped(25)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Copz1 interacts with 143 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process intracellular protein transport, intra-Golgi vesicle-mediated transport, ...
Component COPI vesicle coat, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(272)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(274) Genomic(1) cDNA(272) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000060992 (Evidence)
Entrez Gene56447 (Evidence)
UniGene29473
DFCITC1573149, TC1591643, TC1591939, TC1603996
DoTSDT.101397141, DT.101719408, DT.536935, DT.91282942, DT.94408198
NIA Mouse Gene IndexU016739
Consensus CDS ProjectCCDS27901.1
International Mouse Knockout Project StatusCopz1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 56447 NCBI Gene Model | MGI Sequence Detail 26948 C57BL/6J ±  kb
transcript NM_019817 RefSeq | MGI Sequence Detail 1672 Not Specified 
polypeptide P61924 UniProt | EBI | MGI Sequence Detail 177 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(4) UniProt(3)
Polymorphisms SNPs within 2kb(157 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022775 AP complex, mu/sigma subunit
InterPro IPR000804 Clathrin adaptor complex, small chain
InterPro IPR011012 Longin-like domain
Protein Ontology PR:000005747 coatomer subunit zeta-1
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGI:1196438, MGI:1915335, MGI:2145892

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory