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Scamp5 Gene Detail
Summary
  • Symbol
    Scamp5
  • Name
    secretory carrier membrane protein 5
  • Synonyms
    Sc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928948
    NCBI Gene: 56807
  • Gene Overview
    MyGene.info: SCAMP5
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:57441327-57468060 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 31.05 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928948
protein coding gene Chr9:57441327-57468104 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034865
protein coding gene Chr9:56645705-56674032 (-)
A/J MGP_AJ_G0034846
protein coding gene Chr9:54823251-54850068 (-)
AKR/J MGP_AKRJ_G0034775
protein coding gene Chr9:56083425-56110459 (-)
BALB/cJ MGP_BALBcJ_G0034838
protein coding gene Chr9:54601547-54628948 (-)
C3H/HeJ MGP_C3HHeJ_G0034548
protein coding gene Chr9:56563925-56590627 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035357
protein coding gene Chr9:58235398-58262121 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032268
protein coding gene Chr9:54137571-54163379 (-)
CAST/EiJ MGP_CASTEiJ_G0033869
protein coding gene Chr9:56649126-56681752 (-)
CBA/J MGP_CBAJ_G0034519
protein coding gene Chr9:60263934-60290976 (-)
DBA/2J MGP_DBA2J_G0034678
protein coding gene Chr9:54691050-54719745 (-)
FVB/NJ MGP_FVBNJ_G0034620
protein coding gene Chr9:53913757-53943911 (-)
LP/J MGP_LPJ_G0034761
protein coding gene Chr9:56946005-56973789 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034663
protein coding gene Chr9:61762980-61789767 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035379
protein coding gene Chr9:56104496-56131236 (-)
PWK/PhJ MGP_PWKPhJ_G0033574
protein coding gene Chr9:54726373-54753933 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033408
protein coding gene Chr9:56394857-56424714 (-)
WSB/EiJ MGP_WSBEiJ_G0033982
protein coding gene Chr9:56035048-56063906 (-)



Homology
more
  • Human Ortholog
    SCAMP5, secretory carrier membrane protein 5
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SCAMP5, secretory carrier membrane protein 5
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 192683
    neXtProt AC: NX_Q8TAC9
    UniProt: Q8TAC9

  • Chr Location
    15q24.2; chr15:74995535-75021495 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 56880
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;2 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SCAMP5
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040722 Ensembl Gene Model | MGI Sequence Detail 26734 C57BL/6J ±  kb
transcript ENSMUST00000046587 Ensembl | MGI Sequence Detail 3225 Not Applicable  
polypeptide ENSMUSP00000035898 Ensembl | MGI Sequence Detail 235 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 77
    cDNA 77

    Microarray probesets 6
Other
Accession IDs
less
MGI:2143036, MGI:2143337
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:66325 Fernandez-Chacon R, et al., Novel SCAMPs lacking NPF repeats: ubiquitous and synaptic vesicle-specific forms implicate SCAMPs in multiple membrane-trafficking functions. J Neurosci. 2000 Nov 1;20(21):7941-50
  • Latest
    J:190524 Shalom-Barak T, et al., Placental PPARgamma regulates spatiotemporally diverse genes and a unique metabolic network. Dev Biol. 2012 Dec 1;372(1):143-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory