Scamp4 MGI Mouse Gene Detail - MGI:1928947 - secretory carrier membrane protein 4

Scamp4 Gene Detail

Symbol

Scamp4
Name

secretory carrier membrane protein 4
Synonyms

2410022D05Rik, Sc4

Feature Type

protein coding gene
IDs

MGI:1928947
NCBI Gene: 56214
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr10:80438716-80451617 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 39.72 cM
Mapping Data

2 experiments

SNPs within 2kb

52 from dbSNP Build 142
Strain Annotations

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1928947	protein coding gene	Chr10:80438706-80451617 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

SCAMP4, secretory carrier membrane protein 4

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SCAMP4, secretory carrier membrane protein 4
Synonyms

SCAMP-4
Links

HGNC:30385

NCBI Gene ID: 113178

neXtProt AC: NX_Q969E2

UniProt: Q969E2
Chr Location

19p13.3; chr19:1905214-1926013 (+) GRCh38

MGI Vertebrate Homology

Scamp4 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: SCAMP4
Gene Tree

Scamp4

less

Phenotype Summary

12 phenotype references

All Mutations and Alleles

6
Chemically induced (other)

1
Endonuclease-mediated

1
Gene trapped

1
Targeted

3
Genomic Mutations

1 involving Scamp4
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

31 strains or lines available

less

All GO Annotations

3
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

713
Tissues

1
cDNA Data

19
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

less

All Sequences

43
RefSeq

2
UniProt

6
CCDS

CCDS24028.1

Ensembl

ENSMUSG00000113949 (Evidence)
NCBI Gene

56214

			Length	Strain/Species	Flank
genomic	56214	NCBI Gene Model \| MGI Sequence Detail	12902	C57BL/6J	± kb
transcript	NM_019575	RefSeq \| MGI Sequence Detail	1802	Not Specified
polypeptide	Q9JKV5	UniProt \| EBI \| MGI Sequence Detail	230	Not Applicable

less

UniProt

6 Sequences
Protein Ontology

PR:000014486 secretory carrier-associated membrane protein 4

(term hierarchy)
InterPro Domains

IPR007273 SCAMP

less

All nucleic 20

cDNA 20

Microarray probesets 5

less

MGI:1926028, MGI:2143603, MGI:2143747, MGI:2143876

Summaries

All 39

Developmental Gene Expression 2

Gene Ontology 1

Phenotypes 12
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:238695 Sampath Kumar A, et al., Loss of maternal Trim28 causes male-predominant early embryonic lethality. Genes Dev. 2017 Jan 01;31(1):12-17

TSS for Scamp4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94575	Chr10:80438699-80438738 (+)	3 bp
Tssr94576	Chr10:80438739-80438746 (+)	27 bp
Tssr94577	Chr10:80439035-80439093 (+)	348 bp
Tssr94578	Chr10:80439116-80439131 (+)	408 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/09/2024 MGI 6.23