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Syngr4 Gene Detail
Summary
  • Symbol
    Syngr4
  • Name
    synaptogyrin 4
  • Synonyms
    1700016O14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928903
    NCBI Gene: 58867
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:45885222-45896714 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 29.58 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    191 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928903
protein coding gene Chr7:45884636-45896737 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032253
protein coding gene Chr7:46211167-46222621 (-)
A/J MGP_AJ_G0032232
protein coding gene Chr7:45283963-45295403 (-)
AKR/J MGP_AKRJ_G0032168
protein coding gene Chr7:46559368-46570817 (-)
BALB/cJ MGP_BALBcJ_G0032244
protein coding gene Chr7:45283973-45295421 (-)
C3H/HeJ MGP_C3HHeJ_G0031959
protein coding gene Chr7:47039181-47050656 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032736
protein coding gene Chr7:48475281-48486738 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029750
protein coding gene Chr7:47836617-47848371 (-)
CAST/EiJ MGP_CASTEiJ_G0031287
protein coding gene Chr7:38487025-38498406 (-)
CBA/J MGP_CBAJ_G0031924
protein coding gene Chr7:50100100-50111579 (-)
DBA/2J MGP_DBA2J_G0032081
protein coding gene Chr7:44964005-44975447 (-)
FVB/NJ MGP_FVBNJ_G0032033
protein coding gene Chr7:44743492-44758669 (-)
LP/J MGP_LPJ_G0032160
protein coding gene Chr7:46918743-46930190 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032070
protein coding gene Chr7:48769090-48780537 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032751
protein coding gene Chr7:45758931-45770382 (-)
PWK/PhJ MGP_PWKPhJ_G0031010
protein coding gene Chr7:38334778-38346466 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030848
protein coding gene Chr7:33788638-33800092 (-)
WSB/EiJ MGP_WSBEiJ_G0031405
protein coding gene Chr7:46262123-46275281 (-)



Homology
more
  • Human Ortholog
    SYNGR4, synaptogyrin 4
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SYNGR4, synaptogyrin 4
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 23546
    neXtProt AC: NX_O95473
    UniProt: O95473

  • Chr Location
    19q13.33; chr19:48364281-48376377 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040231 Ensembl Gene Model | MGI Sequence Detail 11493 C57BL/6J ±  kb
transcript ENSMUST00000039049 Ensembl | MGI Sequence Detail 967 Not Applicable  
polypeptide ENSMUSP00000047035 Ensembl | MGI Sequence Detail 233 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 3
Other
Accession IDs
less
MGI:1923664
References
more
  • Summaries
    All 28
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory