Pdzk1
Gene Detail

Symbol

Name
ID

Pdzk1
PDZ domain containing 1
MGI:1928901

Synonyms

1700023D20Rik, 2610507N21Rik, 4921513F16Rik, D3Ertd537e, mPDZK1

Feature Type

protein coding gene

Genetic Map

Chromosome 3
42.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr3:96829284-96870926 bp, + strand From VEGA annotation of GRCm38   41643 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:1964  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Pdzk1

Human
homologs

Human Homolog		PDZK1, PDZ domain containing 1
NCBI Gene ID		5174
neXtProt AC		NX_Q5T2W1
Human Synonyms		CAP70, CLAMP, NHERF3, NHERF-3, PDZD1
Human Chr (Location)		1q21; chr1:145670852-145707404 (-)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(6) : Gene trapped(1) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
 

Homozygous mutation of this gene results in increased serum cholesterol levels.

 

Interactions

Pdzk1 interacts with 138 markers (Mir7-1, Mir7-2, Mir7b, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (20 annotations)

Process	carnitine transport, establishment of protein localization to plasma membrane, ...
Component	apical plasma membrane, brush border membrane, ...
Function	PDZ domain binding, protein binding, ...

External Resources: FuncBase

Expression

Literature Summary: (6 records)

Data Summary: Results (40)    Tissues (29)    Images (8)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	6
Northern blot	2
RT-PCR	32

cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(21) Genomic(1) cDNA(16) Primer pair(3) Other(1)
Microarray probesets(3)

Other database
links

VEGA Gene Model	OTTMUSG00000024711 (Evidence)
Ensembl Gene Model	ENSMUSG00000038298 (Evidence)
Entrez Gene	59020 (Evidence)
NIA Mouse Gene Index	U003608
PDB	3NGH, 2EDZ, 4F8K, 3R69, 3R68, 2D90
Consensus CDS Project	CCDS17649.1
International Mouse Knockout Project Status	Pdzk1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000024711	VEGA Gene Model | MGI Sequence Detail	41643	C57BL/6J
transcript	OTTMUST00000060818	VEGA | MGI Sequence Detail	2406	Not Applicable
polypeptide	OTTMUSP00000029719	VEGA | MGI Sequence Detail	519	Not Applicable

All sequences(66) RefSeq(12) UniProt(4)

Polymorphisms

SNPs within 2kb(199 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR001478	PDZ domain
Protein Ontology	PR:000012528	Na(+)/H(+) exchange regulatory cofactor NHE-RF3

References

(Earliest) J:66318 Kocher O, et al., PDZK1, a novel PDZ domain-containing protein up-regulated in carcinomas and mapped to chromosome 1q21, interacts with cMOAT (MRP2), the multidrug resistance-associated protein. Lab Invest. 1999 Sep;79(9):1161-70
(Latest) J:191894 Giral H, et al., NHE3 regulatory factor 1 (NHERF1) modulates intestinal sodium-dependent phosphate transporter (NaPi-2b) expression in apical microvilli. J Biol Chem. 2012 Oct 12;287(42):35047-56
All references(62)

Other
accession IDs

MGI:1277210, MGI:1918104, MGI:1919393, MGI:1919470, MGI:2139658, MGI:2139665, MGI:2139848