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Ranbp9 Gene Detail
Summary
  • Symbol
    Ranbp9
  • Name
    RAN binding protein 9
  • Synonyms
    IBAP-1, RanBPM
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928741
    NCBI Gene: 56705
  • Alliance
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:43556151-43634758 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 13, 21.60 cM, cytoband A5
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    337 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928741
protein coding gene Chr13:43556151-43634949 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020500
protein coding gene Chr13:41998508-42079057 (-)
A/J MGP_AJ_G0020454
protein coding gene Chr13:40567408-40649008 (-)
AKR/J MGP_AKRJ_G0020432
protein coding gene Chr13:41687181-41765158 (-)
BALB/cJ MGP_BALBcJ_G0020450
protein coding gene Chr13:40776528-40854957 (-)
C3H/HeJ MGP_C3HHeJ_G0020249
protein coding gene Chr13:41549534-41628758 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020883
protein coding gene Chr13:43287294-43372002 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018470
protein coding gene Chr13:38667983-38748201 (-)
CAST/EiJ MGP_CASTEiJ_G0019764
protein coding gene Chr13:41388265-41472612 (-)
CBA/J MGP_CBAJ_G0020210
protein coding gene Chr13:45127582-45208239 (-)
DBA/2J MGP_DBA2J_G0020332
protein coding gene Chr13:40127842-40207341 (-)
FVB/NJ MGP_FVBNJ_G0020311
protein coding gene Chr13:39655151-39733540 (-)
LP/J MGP_LPJ_G0020407
protein coding gene Chr13:42239576-42321003 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020340
protein coding gene Chr13:45036306-45120526 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020926
protein coding gene Chr13:41352174-41431057 (-)
PWK/PhJ MGP_PWKPhJ_G0019519
protein coding gene Chr13:40242807-40321656 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019349
protein coding gene Chr13:39976763-40060324 (-)
WSB/EiJ MGP_WSBEiJ_G0019826
protein coding gene Chr13:41661048-41742713 (-)



Homology
more
  • Human Ortholog
    RANBP9, RAN binding protein 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RANBP9, RAN binding protein 9
  • Synonyms
    BPM90, BPM-L, RanBP7, RANBPM
  • Links
    NCBI Gene ID: 10048
    neXtProt AC: NX_Q96S59
    UniProt: Q96S59

  • Chr Location
    6p23; chr6:13621498-13711835 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    39 phenotypes from 3 alleles in 4 genetic backgrounds
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation display partial neonatal lethality. Survivors display infertility with impaired spermatogenesis and oogenesis, azoospermia and premature ovarian failure.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000038546 Ensembl Gene Model | MGI Sequence Detail 78608 C57BL/6J ±  kb
    transcript ENSMUST00000144326 Ensembl | MGI Sequence Detail 3371 Not Applicable  
    polypeptide ENSMUSP00000130636 Ensembl | MGI Sequence Detail 710 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 6
      Primer pair 1

      Microarray probesets 5
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 2
      Gene Ontology 11
      Phenotypes 18
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.
    last database update
    03/12/2024
    MGI 6.23
    The Jackson Laboratory