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Ranbp9
Gene Detail
 Symbol
Name
ID
Ranbp9
RAN binding protein 9
MGI:1928741
Synonyms IBAP-1, RanBPM
Feature Type protein coding gene
Genetic Map
Chromosome 13
21.60 cM, cytoband A5
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr13:43402673-43480973 bp, - strand
From NCBI annotation of GRCm38

  78301 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:38057  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ranbp9

Human
homologs
Human Homolog RANBP9, RAN binding protein 9
NCBI Gene ID 10048
neXtProt AC  NX_Q96S59
Human Synonyms  BPM90, BPM-L, RanBP7, RANBPM
Human Chr (Location)  6p23; chr6:13621498-13711564 (-)  GRCh38
Alleles
and
phenotypes
All alleles(13) : Gene trapped(9) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null mutation display partial neonatal lethality. Survivors display infertility with impaired spermatogenesis and oogenesis, azoospermia and premature ovarian failure.
 
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Component cytoplasm, nucleus
Function enzyme binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000038546 (Evidence)
Entrez Gene56705 (Evidence)
NIA Mouse Gene IndexU034723
Consensus CDS ProjectCCDS49252.1
International Mouse Knockout Project StatusRanbp9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 56705 NCBI Gene Model | MGI Sequence Detail 78301 C57BL/6J ±  kb
transcript NM_019930 RefSeq | MGI Sequence Detail 3064 C57BL/6 
polypeptide P69566 UniProt | EBI | MGI Sequence Detail 653 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(3) UniProt(2)
Polymorphisms SNPs within 2kb(337 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001870 B30.2/SPRY domain
InterPro IPR008985 Concanavalin A-like lectin/glucanases superfamily
InterPro IPR013144 CRA domain
InterPro IPR024964 CTLH/CRA C-terminal to LisH motif domain
InterPro IPR006595 CTLH, C-terminal LisH motif
InterPro IPR006594 LisH dimerisation motif
InterPro IPR013720 LisH dimerisation motif, subgroup
InterPro IPR003877 SPla/RYanodine receptor SPRY
InterPro IPR018355 SPla/RYanodine receptor subgroup
Protein Ontology PR:000013716 ran-binding protein 9
Graphical View of Protein Domain Structure
References (Earliest) J:71365 Nishitani H, et al., Full-sized RanBPM cDNA encodes a protein possessing a long stretch of proline and glutamine within the N-terminal region, comprising a large protein complex. Gene. 2001 Jul 11;272(1-2):25-33
(Latest) J:205970 Wang H, et al., COPS5 (Jab1) protein increases beta site processing of amyloid precursor protein and amyloid beta peptide generation by stabilizing RanBP9 protein levels. J Biol Chem. 2013 Sep 13;288(37):26668-77
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory