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Slc25a20
Gene Detail
Symbol

Name
ID
Slc25a20
solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
MGI:1928738
Synonyms
1110007P09Rik, Cact, mCAC
Feature Type
protein coding gene
Genetic Map
Chromosome 9
59.61 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:108662088-108684641 bp, + strand
From VEGA annotation of GRCm38

  22554 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:331  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC25A20
Gene Tree: Slc25a20

Human
homologs
SLC25A20, solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 788
neXtProt AC: NX_O43772

Human Synonyms: CAC, CACT

Human Chr (Location): 3p21.31; chr3:48856923-48898993 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SLC25A20

Mutations,
alleles, and
phenotypes
All mutations/alleles(17) : Gene trapped(15) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc25a20 interacts with 129 markers (Mir19a, Mir19b-1, Mir19b-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process transport
Component cytoplasm, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(83)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc25a20, slc25a20.2 ; ZFIN slc25a20    NEW 
Molecular
reagents
All nucleic(84) cDNA(83) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000050670 (Evidence)
Ensembl Gene Model ENSMUSG00000032602 (Evidence)
Entrez Gene 57279 (Evidence)
UniGene 29666
DFCI TC1576129
DoTS DT.97402664, DT.534996, DT.101333109
NIA Mouse Gene Index U011036
Consensus CDS Project CCDS23535.1
International Mouse Phenotyping Consortium Status Slc25a20
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050670 VEGA Gene Model | MGI Sequence Detail 22554 C57BL/6J ±  kb
transcript OTTMUST00000128446 VEGA | MGI Sequence Detail 1783 Not Applicable 
polypeptide OTTMUSP00000069097 VEGA | MGI Sequence Detail 301 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(120 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023395 Mitochondrial carrier domain
InterPro IPR018108 Mitochondrial substrate/solute carrier
Protein Ontology PR:000015016 mitochondrial carnitine/acylcarnitine carrier protein
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(42)
Other
accession IDs
MGI:1919042, MGI:2143399

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory