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Stx5a
Gene Detail
 Symbol
Name
ID
Stx5a
syntaxin 5A
MGI:1928483
Synonyms 0610031F24Rik, D19Ertd627e, syntaxin 5
Feature Type protein coding gene
Genetic Map
Chromosome 19
5.45 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr19:8741413-8756069 bp, + strand
From VEGA annotation of GRCm38

  14657 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2381  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 2 zebrafish

Gene Tree: Stx5a

Human
homologs
Human Homolog STX5, syntaxin 5
NCBI Gene ID 6811
neXtProt AC  NX_Q13190
Human Synonyms  SED5, STX5A
Human Chr (Location)  11q12.3; chr11:62806860-62832091 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Stx5a interacts with 255 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process ER to Golgi vesicle-mediated transport, intracellular protein transport, ...
Component endoplasmic reticulum, Golgi apparatus, ...
Function protein N-terminus binding, SNAP receptor activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
cDNA source data(142)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(143) cDNA(142) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000039850 (Evidence)
Ensembl Gene ModelENSMUSG00000010110 (Evidence)
Entrez Gene56389 (Evidence)
UniGene153061
DFCITC1574359, TC1680247, TC1700531
NIA Mouse Gene IndexU019123
Consensus CDS ProjectCCDS29542.2
International Mouse Knockout Project StatusStx5a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000039850 VEGA Gene Model | MGI Sequence Detail 14657 C57BL/6J ±  kb
transcript OTTMUST00000103607 VEGA | MGI Sequence Detail 1780 Not Applicable 
polypeptide OTTMUSP00000057907 VEGA | MGI Sequence Detail 442 Not Applicable 

For the selected sequences
All sequences(107) RefSeq(10) UniProt(10)
Polymorphisms SNPs within 2kb(38 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006012 Syntaxin/epimorphin, conserved site
InterPro IPR006011 Syntaxin, N-terminal
InterPro IPR000727 Target SNARE coiled-coil domain
InterPro IPR010989 t-SNARE
Protein Ontology PR:000015797 syntaxin-5
References (Earliest) J:46012 Hay JC, et al., Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Cell. 1997 Apr 4;89(1):149-58
(Latest) J:170300 Chen J, et al., Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition. Genes Dev. 2011 Apr 1;25(7):755-66
All references(41)
Other
accession IDs
MGI:1277164, MGI:1917590

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory