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Stx5a
Gene Detail
Symbol

Name
ID
Stx5a
syntaxin 5A
MGI:1928483
Synonyms
0610031F24Rik, D19Ertd627e, syntaxin 5
Feature Type
protein coding gene
Genetic Map
Chromosome 19
5.45 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr19:8741413-8756069 bp, + strand
From VEGA annotation of GRCm38

  14657 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2381  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: STX5
Gene Tree: Stx5a

Human
homologs
STX5, syntaxin 5
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 6811
neXtProt AC: NX_Q13190

Human Synonyms: SED5, STX5A

Human Chr (Location): 11q12.3; chr11:62806860-62832091 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Stx5a interacts with 254 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
cDNA source data(142)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(143) cDNA(142) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000039850 (Evidence)
Ensembl Gene Model ENSMUSG00000010110 (Evidence)
Entrez Gene 56389 (Evidence)
UniGene 153061
DFCI TC1680247, TC1574359, TC1700531
NIA Mouse Gene Index U019123
Consensus CDS Project CCDS29542.2
International Mouse Phenotyping Consortium Status Stx5a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000039850 VEGA Gene Model | MGI Sequence Detail 14657 C57BL/6J ±  kb
transcript OTTMUST00000103607 VEGA | MGI Sequence Detail 1780 Not Applicable 
polypeptide OTTMUSP00000057907 VEGA | MGI Sequence Detail 442 Not Applicable 

For the selected sequences
All sequences(113) RefSeq(10) UniProt(10)
Polymorphisms
SNPs within 2kb(38 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006012 Syntaxin/epimorphin, conserved site
InterPro IPR006011 Syntaxin, N-terminal
InterPro IPR000727 Target SNARE coiled-coil domain
InterPro IPR010989 t-SNARE
Protein Ontology PR:000015797 syntaxin-5
References
(Earliest) J:46012 Hay JC, et al., Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Cell. 1997 Apr 4;89(1):149-58
(Latest) J:170300 Chen J, et al., Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition. Genes Dev. 2011 Apr 1;25(7):755-66
All references(40)
Other
accession IDs
MGI:1277164, MGI:1917590

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory