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Trip4
Gene Detail
 Symbol
Name
ID
Trip4
thyroid hormone receptor interactor 4
MGI:1928469
Synonyms 4930558E03Rik, ASC-1
Feature Type protein coding gene
Genetic Map
Chromosome 9
35.55 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:65831136-65908794 bp, - strand
From VEGA annotation of GRCm38

  77659 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9426  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Trip4

Human
homologs
Human Homolog TRIP4, thyroid hormone receptor interactor 4
NCBI Gene ID 9325
neXtProt AC  NX_Q15650
Human Synonyms  ASC1, ASC-1, HsT17391, ZC2HC5
Human Chr (Location)  15q22.31; chr15:64387804-64455303 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(23) : Gene trapped(21) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trip4 interacts with 380 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component cytoplasm, cytoskeleton, ...
Function ligand-dependent nuclear receptor binding, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (78)    Tissues (26)    Images (25)
Theiler Stages: 23, 24, 26, 28
Assay TypeResults
RNA in situ 78
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(15) cDNA(15)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000029847 (Evidence)
Ensembl Gene ModelENSMUSG00000032386 (Evidence)
Entrez Gene56404 (Evidence)
DFCITC1579839, TC1589647, TC1604682, TC1619037, TC1626829, TC1627415, TC1629175, TC1695815
DoTSDT.101156661, DT.40180766, DT.527884, DT.91386467, DT.94170253, DT.97354941, DT.97412452, DT.99857091
Consensus CDS ProjectCCDS23298.1, CCDS52838.1
International Mouse Knockout Project StatusTrip4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029847 VEGA Gene Model | MGI Sequence Detail 77659 C57BL/6J ±  kb
transcript OTTMUST00000074067 VEGA | MGI Sequence Detail 4211 Not Applicable 
polypeptide OTTMUSP00000038429 VEGA | MGI Sequence Detail 581 Not Applicable 

For the selected sequences
All sequences(87) RefSeq(16) UniProt(4)
Polymorphisms SNPs within 2kb(256 from dbSNP Build 137)    SNPs within 2kb including multiple locations(266)
Protein-related
information
ResourceIDDescription
InterPro IPR007374 ASCH domain
InterPro IPR015947 PUA-like domain
InterPro IPR009349 Zinc finger, C2HC5-type
Protein Ontology PR:000016673 activating signal cointegrator 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:1922616, MGI:2143370

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory