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Trip4
Gene Detail
Symbol

Name
ID
Trip4
thyroid hormone receptor interactor 4
MGI:1928469
Synonyms
4930558E03Rik, ASC-1
Feature Type
protein coding gene
Genetic Map
Chromosome 9
35.55 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:65831136-65908794 bp, - strand
From VEGA annotation of GRCm38

  77659 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9426  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: TRIP4
Gene Tree: Trip4

Human
homologs
TRIP4, thyroid hormone receptor interactor 4
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 9325
neXtProt AC: NX_Q15650

Human Synonyms: ASC1, ASC-1, HsT17391, ZC2HC5

Human Chr (Location): 15q22.31; chr15:64387804-64455303 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(23) : Gene trapped(21) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trip4 interacts with 379 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (78)    Tissues (27)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 78
cDNA source data(12)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase trip4 ; ZFIN trip4    NEW 
Molecular
reagents
All nucleic(15) cDNA(15)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000029847 (Evidence)
Ensembl Gene Model ENSMUSG00000032386 (Evidence)
Entrez Gene 56404 (Evidence)
DFCI TC1604682, TC1589647, TC1579839, TC1627415, TC1619037, TC1626829, TC1629175, TC1695815
DoTS DT.91386467, DT.527884, DT.40180766, DT.101156661, DT.94170253, DT.97354941, DT.97412452, DT.99857091
Consensus CDS Project CCDS23298.1, CCDS52838.1
International Mouse Phenotyping Consortium Status Trip4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029847 VEGA Gene Model | MGI Sequence Detail 77659 C57BL/6J ±  kb
transcript OTTMUST00000074067 VEGA | MGI Sequence Detail 4211 Not Applicable 
polypeptide OTTMUSP00000038429 VEGA | MGI Sequence Detail 581 Not Applicable 

For the selected sequences
All sequences(89) RefSeq(18) UniProt(4)
Polymorphisms
SNPs within 2kb(256 from dbSNP Build 137)    SNPs within 2kb including multiple locations(266)
Protein-related
information
ResourceIDDescription
InterPro IPR007374 ASCH domain
InterPro IPR015947 PUA-like domain
InterPro IPR009349 Zinc finger, C2HC5-type
Protein Ontology PR:000016673 activating signal cointegrator 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197389 Slater LH, et al., CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells. Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9932-7
All references(35)
Other
accession IDs
MGI:1922616, MGI:2143370

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory