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Snx1
Gene Detail
Symbol

Name
ID
Snx1
sorting nexin 1
MGI:1928395
Feature Type
protein coding gene
Genetic Map
Chromosome 9
35.71 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:66088133-66126587 bp, - strand
From VEGA annotation of GRCm38

  38455 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:99716  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: SNX1
Protein SuperFamily: sorting nexin, Snx1 type
Gene Tree: Snx1

Human
homologs
SNX1, sorting nexin 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 6642
neXtProt AC: NX_Q13596

Human Synonyms: HsT17379, VPS5

Human Chr (Location): 15q22.31; chr15:64094076-64144234 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(10) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Homozygous mutant mice are viable and fertile and do not exhibit any apparent abnormalities.
 
Interactions
Snx1 interacts with 111 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (35 annotations)
Process early endosome to Golgi transport, endocytosis, ...
Component cell projection, cytoplasm, ...
Function epidermal growth factor receptor binding, identical protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (2)    Tissues (2)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 2
cDNA source data(156)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase snx1 ; ZFIN snx1a    NEW 
Molecular
reagents
All nucleic(157) cDNA(156) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000031789 (Evidence)
Ensembl Gene Model ENSMUSG00000032382 (Evidence)
Entrez Gene 56440 (Evidence)
UniGene 271891
DFCI TC1573360, TC1772607
DoTS DT.535366, DT.101352285
NIA Mouse Gene Index U031018
Consensus CDS Project CCDS52839.1
International Mouse Phenotyping Consortium Status Snx1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031789 VEGA Gene Model | MGI Sequence Detail 38455 C57BL/6J ±  kb
transcript OTTMUST00000078780 VEGA | MGI Sequence Detail 2073 Not Applicable 
polypeptide OTTMUSP00000041926 VEGA | MGI Sequence Detail 521 Not Applicable 

For the selected sequences
All sequences(67) RefSeq(2) UniProt(6)
Polymorphisms
SNPs within 2kb(224 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
InterPro IPR005329 Sorting nexin, N-terminal
InterPro IPR015404 Vps5 C-terminal
Protein Ontology PR:000015358 sorting nexin-1
References
(Earliest) J:212820 Haft CR, et al., Identification of a family of sorting nexin molecules and characterization of their association with receptors. Mol Cell Biol. 1998 Dec;18(12):7278-87
(Latest) J:208189 Fukaya M, et al., EFA6A, a guanine nucleotide exchange factor for Arf6, interacts with sorting nexin-1 and regulates neurite outgrowth. J Neurochem. 2014 Apr;129(1):21-36
All references(40)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory