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B4galt6
Gene Detail
Symbol

Name
ID
B4galt6
UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
MGI:1928380
Feature Type
protein coding gene
Genetic Map
Chromosome 18
11.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr18:20684599-20746404 bp, - strand
From NCBI annotation of GRCm38

  61806 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3506  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: B4GALT6
Protein SuperFamily: beta-1,4-galactosyltransferase, B4GalT1-6 types
Gene Tree: B4galt6

Human
homologs
B4GALT6, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9331
neXtProt AC: NX_Q9UBX8

Human Synonyms: B4Gal-T6, beta4Gal-T6

Human Chr (Location): 18q11; chr18:31622246-31725286 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(71) : Gene trapped(69) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Interactions
B4galt6 interacts with 345 markers (Mir1b, Mir7-1, Mir7-2, ...)
Expression
Literature Summary: (5 records)
Data Summary: Results (283)    Tissues (153)    Images (32)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 276
RT-PCR 7
cDNA source data(15)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase b4galt6 ; ZFIN b4galt6    NEW 
Molecular
reagents
All nucleic(16) cDNA(15) Primer pair(1)
Microarray probesets(7)
Other database
links
Ensembl Gene Model ENSMUSG00000056124 (Evidence)
Entrez Gene 56386 (Evidence)
DFCI TC1645617, TC1612873, TC1578762
DoTS DT.487103, DT.528524, DT.94131587
NIA Mouse Gene Index U061328
EC 2.4.1.-, 2.4.1.274
Consensus CDS Project CCDS29086.1
International Mouse Phenotyping Consortium Status B4galt6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 56386 NCBI Gene Model | MGI Sequence Detail 61806 C57BL/6J ±  kb
transcript NM_019737 RefSeq | MGI Sequence Detail 5808 C57BL/6 
polypeptide Q9WVK5 UniProt | EBI | MGI Sequence Detail 382 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(2) UniProt(5)
Polymorphisms
SNPs within 2kb(361 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003859 Galactosyltransferase, metazoa
Protein Ontology PR:000004610 beta-1,4-galactosyltransferase 6
Graphical View of Protein Domain Structure
References
(Earliest) J:47946 Nomura T, et al., Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain. J Biol Chem. 1998 May 29;273(22):13570-7
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)
Other
accession IDs
MGI:2147179, MGI:2147314

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory