About   Help   FAQ
B4galt6
Gene Detail
Symbol

Name
ID
B4galt6
UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
MGI:1928380
Feature Type
protein coding gene
Genetic Map
Chromosome 18
11.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr18:20684599-20746404 bp, - strand
From NCBI annotation of GRCm38

  61806 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3506  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: beta-1,4-galactosyltransferase, B4GalT1-6 types
Gene Tree: B4galt6

Human
homologs
Human Homolog B4GALT6, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
NCBI Gene ID 9331
neXtProt AC  NX_Q9UBX8
Human Synonyms  B4Gal-T6, beta4Gal-T6
Human Chr (Location)  18q11; chr18:31622246-31726593 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(71) : Gene trapped(69) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Interactions
B4galt6 interacts with 346 markers (Mir1b, Mir7-1, Mir7-2, ...)
Expression
Literature Summary: (5 records)
Data Summary: Results (283)    Tissues (153)    Images (32)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 276
RT-PCR 7
cDNA source data(15)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(16) cDNA(15) Primer pair(1)
Microarray probesets(7)
Other database
links
Ensembl Gene ModelENSMUSG00000056124 (Evidence)
Entrez Gene56386 (Evidence)
DFCITC1612873, TC1578762, TC1645617
DoTSDT.528524, DT.487103, DT.94131587
NIA Mouse Gene IndexU061328
EC2.4.1.-, 2.4.1.274
Consensus CDS ProjectCCDS29086.1
International Mouse Knockout Project StatusB4galt6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 56386 NCBI Gene Model | MGI Sequence Detail 61806 C57BL/6J ±  kb
transcript NM_019737 RefSeq | MGI Sequence Detail 5808 C57BL/6 
polypeptide Q9WVK5 UniProt | EBI | MGI Sequence Detail 382 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(2) UniProt(9)
Polymorphisms
SNPs within 2kb(361 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003859 Galactosyltransferase, metazoa
Protein Ontology PR:000004610 beta-1,4-galactosyltransferase 6
Graphical View of Protein Domain Structure
References
(Earliest) J:47946 Nomura T, et al., Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain. J Biol Chem. 1998 May 29;273(22):13570-7
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(41)
Other
accession IDs
MGI:2147179, MGI:2147314

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/09/2014
MGI 5.20
The Jackson Laboratory