B4galt6
Gene Detail

Symbol Name ID

B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 MGI:1928380

Feature Type

protein coding gene

Genetic Map

Chromosome 18

11.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr18:20684599-20746404 bp, - strand From NCBI annotation of GRCm38   61806 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Mammalian homology

human; rat; cattle; chimpanzee; dog, domestic    (Mammalian Orthology)
Comparative Map (Mouse/Human B4galt6 ± 2 cM)

Protein SuperFamily: beta-1,4-galactosyltransferase, B4GalT1-6 types
Gene Tree: B4galt6

Human ortholog

B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 NCBI Gene ID 9331
Human Synonyms: B4Gal-T6, beta4Gal-T6
Human Chr18:29202209-29264686 bp, - strand Reference GRCh37.p2 Primary Assembly

Alleles and phenotypes

All alleles(71) : Targeted(2) Gene trapped(69)
 

Mice homozygous for disruptions in this gene display a normal phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (13 annotations)

Process	carbohydrate metabolic process, metabolic process, ...
Component	Golgi apparatus, integral to membrane, ...
Function	galactosyltransferase activity, metal ion binding, ...

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (246)    Tissues (115)    Images (30)
Theiler Stages: 20, 22, 23, 24, 26, 28

Assay Type	Results
RNA in situ	239
RT-PCR	7

cDNA source data(15)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(16) cDNA(15) Primer pair(1)
Microarray probesets(7)

Other database links

Ensembl Gene Model	ENSMUSG00000056124 (Evidence)
Entrez Gene	56386 (Evidence)
DFCI	TC1578762, TC1612873, TC1645617
DoTS	DT.487103, DT.528524, DT.94131587
NIA Mouse Gene Index	U061328
EC	2.4.1.-, 2.4.1.274
Consensus CDS Project	CCDS29086.1
International Mouse Knockout Project Status	B4galt6

Sequences

Length	Strain/Species
genomic	56386	NCBI Gene Model | MGI Sequence Detail	61806	C57BL/6J
transcript	NM_019737	RefSeq | MGI Sequence Detail	5808	C57BL/6
polypeptide	Q9WVK5	UniProt | EBI | MGI Sequence Detail	382	Not Applicable

All sequences(39) RefSeq(2) UniProt(5)

Polymorphisms

SNPs(276 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR003859	Galactosyltransferase, metazoa
Protein Ontology	PR:000004610	beta-1,4-galactosyltransferase 6

Graphical View of Protein Domain Structure

References

(Earliest) J:47946 Nomura T, et al., Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain. J Biol Chem. 1998 May 29;273(22):13570-7
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)

Other accession IDs

MGI:2147179, MGI:2147314