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Tspan3
Gene Detail
Symbol

Name
ID
Tspan3
tetraspanin 3
MGI:1928098
Synonyms
1700055K04Rik, tetraspanin, tetraspanin TM4-A homolog, TM4-A, Tm4sf8, Tspan-3
Feature Type
protein coding gene
Genetic Map
Chromosome 9
30.13 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:56135885-56161070 bp, - strand
From Ensembl annotation of GRCm38

  25186 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21168  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: tetraspanin
Gene Tree: Tspan3

Human
homologs
Human Homolog TSPAN3, tetraspanin 3
NCBI Gene ID 10099
neXtProt AC  NX_O60637
Human Synonyms  TM4-A, TM4SF8, TSPAN-3
Human Chr (Location)  15q24.3; chr15:77044017-77071228 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(8) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Tspan3 interacts with 159 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component extracellular vesicular exosome, integral component of membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (112)    Tissues (23)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 95
Northern blot 17
cDNA source data(212)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(213) cDNA(212) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000032324 (Evidence)
Entrez Gene56434 (Evidence)
UniGene28484
DFCITC1596254, TC1573354, TC1605357
DoTSDT.110634204, DT.101382845, DT.101315570, DT.101206823, DT.99870932, DT.495581
NIA Mouse Gene IndexU030903
Consensus CDS ProjectCCDS23207.1
International Mouse Knockout Project StatusTspan3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032324 Ensembl Gene Model | MGI Sequence Detail 25186 C57BL/6J ±  kb
transcript ENSMUST00000034876 Ensembl | MGI Sequence Detail 1728 Not Applicable 
polypeptide ENSMUSP00000034876 Ensembl | MGI Sequence Detail 253 Not Applicable 

For the selected sequences
All sequences(80) RefSeq(2) UniProt(17)
Polymorphisms
SNPs within 2kb(87 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000301 Tetraspanin
InterPro IPR018503 Tetraspanin, conserved site
InterPro IPR008952 Tetraspanin, EC2 domain
InterPro IPR018499 Tetraspanin/Peripherin
Protein Ontology PR:000016746 tetraspanin-3
References
(Earliest) J:64920 Todd SC, et al., Sequences and expression of six new members of the tetraspanin/TM4SF family. Biochim Biophys Acta. 1998 Jul 30;1399(1):101-4
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:1920663

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory