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Vsig2 Gene Detail
Summary
  • Symbol
    Vsig2
  • Name
    V-set and immunoglobulin domain containing 2
  • Synonyms
    1190004B15Rik, 2210413P10Rik, CTM, CTX
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928009
    NCBI Gene: 57276
  • Gene Overview
    MyGene.info: VSIG2
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:37539255-37544205 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 20.78 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928009
protein coding gene Chr9:37539255-37544205 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034567
protein coding gene Chr9:35538091-35543023 (+)
A/J MGP_AJ_G0034546
protein coding gene Chr9:34583722-34588773 (+)
AKR/J MGP_AKRJ_G0034473
protein coding gene Chr9:35342230-35347180 (+)
BALB/cJ MGP_BALBcJ_G0034537
protein coding gene Chr9:34421478-34426408 (+)
C3H/HeJ MGP_C3HHeJ_G0034250
protein coding gene Chr9:35775261-35780191 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035059
protein coding gene Chr9:36673932-36678874 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031985
protein coding gene Chr9:33687508-33692430 (+)
CAST/EiJ MGP_CASTEiJ_G0033571
protein coding gene Chr9:35470195-35475106 (+)
CBA/J MGP_CBAJ_G0034223
protein coding gene Chr9:37936658-37941576 (+)
DBA/2J MGP_DBA2J_G0034381
protein coding gene Chr9:34631158-34636149 (+)
FVB/NJ MGP_FVBNJ_G0034322
protein coding gene Chr9:33883158-33888098 (+)
LP/J MGP_LPJ_G0034466
protein coding gene Chr9:35714663-35719467 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034368
protein coding gene Chr9:39534829-39539767 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035078
protein coding gene Chr9:35281065-35285991 (+)
PWK/PhJ MGP_PWKPhJ_G0033277
protein coding gene Chr9:34527222-34532211 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033111
protein coding gene Chr9:35477531-35482484 (+)
WSB/EiJ MGP_WSBEiJ_G0033687
protein coding gene Chr9:35098344-35103278 (+)



Homology
more
  • Human Ortholog
    VSIG2, V-set and immunoglobulin domain containing 2
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VSIG2, V-set and immunoglobulin domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    2210413P10Rik, CTH, CTXL
  • Links
    NCBI Gene ID: 23584
    neXtProt AC: NX_Q96IQ7
    UniProt: Q96IQ7

  • Chr Location
    11q24.2; chr11:124747474-124752213 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 57276 NCBI Gene Model | MGI Sequence Detail 4951 C57BL/6J ±  kb
transcript NM_020518 RefSeq | MGI Sequence Detail 1170 C57BL/6  
polypeptide Q9Z109 UniProt | EBI | MGI Sequence Detail 328 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916153, MGI:1919617, MGI:2143229
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:64925 Chretien I, et al., CTX, a Xenopus thymocyte receptor, defines a molecular family conserved throughout vertebrates. Eur J Immunol. 1998 Dec;28(12):4094-104
  • Latest
    J:229257 Gu Z, et al., Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. PLoS One. 2015;10(3):e0121550

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory