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Ms4a4c Gene Detail
Summary
  • Symbol
    Ms4a4c
  • Name
    membrane-spanning 4-domains, subfamily A, member 4C
  • Synonyms
    5830413L19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927656
    NCBI Gene: 64380
  • Member of
    Ms4ac cluster
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:11382134-11404610 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 8.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927656
 protein coding gene Chr19:11382081-11404610 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024878
 protein coding gene Chr19:8795459-8817479 (+)
A/J MGP_AJ_G0024846
 protein coding gene Chr19:8229462-8249203 (+)
AKR/J MGP_AKRJ_G0024821
 protein coding gene Chr19:8535707-8564663 (+)
BALB/cJ MGP_BALBcJ_G0024846
 protein coding gene Chr19:8260550-8286768 (+)
C3H/HeJ MGP_C3HHeJ_G0024612
 protein coding gene Chr19:8421188-8434329 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025294
 protein coding gene Chr19:9186485-9208542 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022721
 protein coding gene Chr19:8624936-8998890 (+)
CAST/EiJ MGP_CASTEiJ_G0024085
 protein coding gene Chr19:8093274-8111649 (+)
CBA/J MGP_CBAJ_G0024586
 protein coding gene Chr19:9255662-9285247 (+)
DBA/2J MGP_DBA2J_G0024713
 protein coding gene Chr19:8218204-8265468 (+)
FVB/NJ MGP_FVBNJ_G0024680
 protein coding gene Chr19:8246526-8271612 (+)
LP/J MGP_LPJ_G0024800
 protein coding gene Chr19:8754281-8776918 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024707
 protein coding gene Chr19:9134557-9165800 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025342
 protein coding gene Chr19:8565473-8588944 (+)
PWK/PhJ MGP_PWKPhJ_G0023829
 protein coding gene Chr19:7674882-7801207 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023636
 protein coding gene Chr19:7779126-7900797 (+)
WSB/EiJ MGP_WSBEiJ_G0024147
 protein coding gene Chr19:8458884-8484146 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    672
  • cDNA Data
    15
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024675 Ensembl Gene Model | MGI Sequence Detail 22477 C57BL/6J ±  kb
transcript ENSMUST00000072729 Ensembl | MGI Sequence Detail 1723 Not Applicable  
polypeptide ENSMUSP00000072512 Ensembl | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR007237 CD20-like family
    IPR030417 Membrane-spanning 4-domains subfamily A
    IPR030425 Membrane-spanning 4-domains subfamily A member 4A
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
Other
Accession IDs
less
MGI:1923261, MGI:2147541
References
more
  • Summaries
    All 27
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/28/2022
MGI 6.20 		The Jackson Laboratory