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Bloc1s6 Gene Detail
Summary
  • Symbol
    Bloc1s6
  • Name
    biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
  • Synonyms
    BLOC-1, BLOC-1 subunit, Pldn
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927580
    NCBI Gene: 18457
  • Gene Overview
    MyGene.info: BLOC1S6
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:122738503-122749475 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 60.66 cM
  • Mapping Data
    54 experiments
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927580
protein coding gene Chr2:122738503-122749487 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026420
protein coding gene Chr2:125782617-125796195 (+)
A/J MGP_AJ_G0026382
protein coding gene Chr2:120646148-120657171 (+)
AKR/J MGP_AKRJ_G0026358
protein coding gene Chr2:124100695-124111773 (+)
BALB/cJ MGP_BALBcJ_G0026394
protein coding gene Chr2:120938877-120949890 (+)
C3H/HeJ MGP_C3HHeJ_G0026138
protein coding gene Chr2:124581971-124592997 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026841
protein coding gene Chr2:129897737-129908709 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024218
protein coding gene Chr2:115565598-115576711 (+)
CAST/EiJ MGP_CASTEiJ_G0025600
protein coding gene Chr2:124826208-124837355 (+)
CBA/J MGP_CBAJ_G0026118
protein coding gene Chr2:134510826-134521848 (+)
DBA/2J MGP_DBA2J_G0026252
protein coding gene Chr2:120083632-120094629 (+)
FVB/NJ MGP_FVBNJ_G0026216
protein coding gene Chr2:118835916-118847715 (+)
LP/J MGP_LPJ_G0026357
protein coding gene Chr2:126028115-126039134 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026237
protein coding gene Chr2:138689385-138700711 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026895
protein coding gene Chr2:124150407-124161432 (+)
PWK/PhJ MGP_PWKPhJ_G0025336
protein coding gene Chr2:119649452-119660500 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025137
protein coding gene Chr2:123231024-123244551 (+)
WSB/EiJ MGP_WSBEiJ_G0025673
protein coding gene Chr2:125029247-125041119 (+)



Homology
more
  • Human Ortholog
    BLOC1S6, biogenesis of lysosomal organelles complex 1 subunit 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    BLOC1S6, biogenesis of lysosomal organelles complex 1 subunit 6
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BLOS6, HPS9, PA, PALLID, PLDN
  • Links
    NCBI Gene ID: 26258
    neXtProt AC: NX_Q9UL45
    UniProt: Q9UL45

  • Chr Location
    15q21.1; chr15:45587123-45609716 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    3 with Bloc1s6 mouse models; 1 with human BLOC1S6 associations

Human Disease Mouse Models
      
IDs
View 1 model
      
IDs
View 1 model
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    39 phenotypes from 1 allele in 3 genetic backgrounds
    18 phenotypes from multigenic genotypes
    1 images
    75 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mutations at this locus result in a coat color abnormality, abnormal platelet morphology, age related lung abnormalities, decreased ssurvival, and impaired motor coordination.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000005804 Ensembl Gene Model | MGI Sequence Detail 10973 C57BL/6J ±  kb
    transcript ENSMUST00000005954 Ensembl | MGI Sequence Detail 3484 Not Applicable  
    polypeptide ENSMUSP00000005954 Ensembl | MGI Sequence Detail 172 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 62
      cDNA 62

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGD-MRK-13119, MGI:97468
    References
    more
    • Summaries
      All 148
      Developmental Gene Expression 3
      Diseases 3
      Gene Ontology 13
      Phenotypes 75
    • Earliest
      J:13138 Roberts E, A new mutation in the house mouse (Mus musculus). Science. 1931;74:569
    • Latest
      J:253039 van Liempd SM, et al., BLOC-1 deficiency causes alterations in amino acid profile and in phospholipid and adenosine metabolism in the postnatal mouse hippocampus. Sci Rep. 2017 Jul 12;7(1):5231

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    Funding Information
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory