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Ykt6 Gene Detail
Summary
  • Symbol
    Ykt6
  • Name
    YKT6 v-SNARE homolog (S. cerevisiae)
  • Synonyms
    0610042I15Rik, 1810013M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927550
    NCBI Gene: 56418
  • Gene Overview
    MyGene.info: YKT6
Location & Maps
more
  • Sequence Map
    Chr11:5955693-5967780 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      12088 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 3.89 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    YKT6, YKT6 v-SNARE homolog (S. cerevisiae)
  • Vertebrate Orthologs
    10
  • Human Ortholog
    YKT6, YKT6 v-SNARE homolog (S. cerevisiae)
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 10652
    neXtProt AC: NX_O15498

  • Chr Location
    7p15.1; chr7:44200968-44214294 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    5
  • Gene trapped
    3
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005103 VEGA Gene Model | MGI Sequence Detail 12088 C57BL/6J ±  kb
transcript OTTMUST00000011413 VEGA | MGI Sequence Detail 2541 Not Applicable  
polypeptide OTTMUSP00000005317 VEGA | MGI Sequence Detail 198 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    43 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 124
    cDNA 123
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1915642, MGI:1923744, MGI:2144493
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 7
    Phenotypes 3
  • Earliest
    J:41722 McNew JA, et al., Ykt6p, a prenylated SNARE essential for endoplasmic reticulum-Golgi transport. J Biol Chem. 1997 Jul 11;272(28):17776-83
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory