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Ykt6 Gene Detail
Summary
  • Symbol
    Ykt6
  • Name
    YKT6 v-SNARE homolog (S. cerevisiae)
  • Synonyms
    0610042I15Rik, 1810013M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927550
    NCBI Gene: 56418
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:5905758-5917780 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 3.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927550
protein coding gene Chr11:5905693-5917780 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018013
protein coding gene Chr11:3050207-3062296 (+)
A/J MGP_AJ_G0017986
protein coding gene Chr11:2928628-2940734 (+)
AKR/J MGP_AKRJ_G0017950
protein coding gene Chr11:3076602-3088706 (+)
BALB/cJ MGP_BALBcJ_G0017954
protein coding gene Chr11:2916877-2928910 (+)
C3H/HeJ MGP_C3HHeJ_G0017767
protein coding gene Chr11:2951934-2964029 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018406
protein coding gene Chr11:3128620-3140707 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016064
protein coding gene Chr11:2825828-2837599 (+)
CAST/EiJ MGP_CASTEiJ_G0017329
protein coding gene Chr11:2924837-2936921 (+)
CBA/J MGP_CBAJ_G0017742
protein coding gene Chr11:3513400-3525485 (+)
DBA/2J MGP_DBA2J_G0017852
protein coding gene Chr11:2832759-2844846 (+)
FVB/NJ MGP_FVBNJ_G0017844
protein coding gene Chr11:2859642-2871694 (+)
LP/J MGP_LPJ_G0017923
protein coding gene Chr11:3128095-3140128 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017870
protein coding gene Chr11:3109990-3122063 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018446
protein coding gene Chr11:3093228-3105327 (+)
PWK/PhJ MGP_PWKPhJ_G0017109
protein coding gene Chr11:2857069-2869276 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016906
protein coding gene Chr11:3049350-3061537 (+)
WSB/EiJ MGP_WSBEiJ_G0017383
protein coding gene Chr11:2924652-2936749 (+)



Homology
more
  • Human Ortholog
    YKT6, YKT6 v-SNARE homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YKT6, YKT6 v-SNARE homolog
  • Links
    NCBI Gene ID: 10652
    neXtProt AC: NX_O15498
    UniProt: O15498

  • Chr Location
    7p13; chr7:44200968-44214294 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 56418 NCBI Gene Model | MGI Sequence Detail 12023 C57BL/6J ±  kb
    transcript NM_019661 RefSeq | MGI Sequence Detail 2491 C57BL/6  
    polypeptide Q9CQW1 UniProt | EBI | MGI Sequence Detail 198 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 125
      cDNA 124
      Other 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1915642, MGI:1923744, MGI:2144493
    References
    more
    • Summaries
      All 36
      Developmental Gene Expression 2
      Gene Ontology 5
      Phenotypes 6
    • Earliest
      J:41722 McNew JA, et al., Ykt6p, a prenylated SNARE essential for endoplasmic reticulum-Golgi transport. J Biol Chem. 1997 Jul 11;272(28):17776-83
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    08/03/2022
    MGI 6.21
    The Jackson Laboratory