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C1d Gene Detail
Summary
  • Symbol
    C1d
  • Name
    C1D nuclear receptor co-repressor
  • Synonyms
    1110036E10Rik, SUN-CoR
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927354
    NCBI Gene: 57316
  • Gene Overview
    MyGene.info: C1D
Location & Maps
more
  • Sequence Map
    Chr11:17257579-17269176 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11598 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 9.89 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    C1D, C1D nuclear receptor corepressor
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C1D, C1D nuclear receptor corepressor
    Orthology source: HGNC, HomoloGene
  • Synonyms
    hC1D, LRP1, Rrp47, SUN-CoR, SUNCOR
  • Links
    NCBI Gene ID: 10438
    neXtProt AC: NX_Q13901

  • Chr Location
    2p13-p12; chr2:68042200-68063027 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 4619
    1 human;1 mouse;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: C1D
  • Gene Tree
    C1d
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    1
  • Gene trapped
    10
  • Genomic Mutations
    1 involving C1d
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005196 VEGA Gene Model | MGI Sequence Detail 11598 C57BL/6J ±  kb
transcript OTTMUST00000011613 VEGA | MGI Sequence Detail 2981 Not Applicable  
polypeptide OTTMUSP00000005398 VEGA | MGI Sequence Detail 141 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    30 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004872 nuclear nucleic acid-binding protein C1D
  • InterPro Domains
    IPR011082 Exosome-associated factor Rrp47/DNA strand repair C1D
    IPR007146 Sas10/Utp3/C1D
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 6
Other
Accession IDs
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MGI:1923569, MGI:2144327
References
more
  • Summaries
    All 25
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:46724 Zamir I, et al., Cloning and characterization of a corepressor and potential component of the nuclear hormone receptor repression complex. Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14400-5
  • Latest
    J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory