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C1d Gene Detail
Summary
  • Symbol
    C1d
  • Name
    C1D nuclear receptor co-repressor
  • Synonyms
    1110036E10Rik, SUN-CoR
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927354
    NCBI Gene: 57316
  • Gene Overview
    MyGene.info: C1D
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:17257618-17269176 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 9.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927354
protein coding gene Chr11:17257579-17269176 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018059
protein coding gene Chr11:14661819-14673416 (+)
A/J MGP_AJ_G0018032
protein coding gene Chr11:14158973-14170632 (+)
AKR/J MGP_AKRJ_G0017996
protein coding gene Chr11:14664045-14675624 (+)
BALB/cJ MGP_BALBcJ_G0018000
protein coding gene Chr11:14274792-14286392 (+)
C3H/HeJ MGP_C3HHeJ_G0017814
protein coding gene Chr11:14602737-14614316 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018452
protein coding gene Chr11:15290518-15302103 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016110
protein coding gene Chr11:13324517-13338002 (+)
CAST/EiJ MGP_CASTEiJ_G0017375
protein coding gene Chr11:14589108-14600679 (+)
CBA/J MGP_CBAJ_G0017788
protein coding gene Chr11:16094801-16106399 (+)
DBA/2J MGP_DBA2J_G0017898
protein coding gene Chr11:14138546-14150144 (+)
FVB/NJ MGP_FVBNJ_G0017890
protein coding gene Chr11:13942745-13954342 (+)
LP/J MGP_LPJ_G0017969
protein coding gene Chr11:14824630-14837404 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017916
protein coding gene Chr11:16537698-16548957 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018493
protein coding gene Chr11:14746007-14757607 (+)
PWK/PhJ MGP_PWKPhJ_G0017155
protein coding gene Chr11:14135310-14147954 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016952
protein coding gene Chr11:14510075-14521687 (+)
WSB/EiJ MGP_WSBEiJ_G0017429
protein coding gene Chr11:14447772-14459369 (+)



Homology
more
  • Human Ortholog
    C1D, C1D nuclear receptor corepressor
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C1D, C1D nuclear receptor corepressor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    hC1D, LRP1, Rrp47, SUN-CoR, SUNCOR
  • Links
    NCBI Gene ID: 10438
    neXtProt AC: NX_Q13901
    UniProt: Q13901

  • Chr Location
    2p14; chr2:68042200-68063027 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4619
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: C1D
  • Gene Tree
    C1d
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 57316 NCBI Gene Model | MGI Sequence Detail 11559 C57BL/6J ±  kb
transcript NM_001330649 RefSeq | MGI Sequence Detail 3236 C57BL/6  
polypeptide O35473 UniProt | EBI | MGI Sequence Detail 141 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR011082 Exosome-associated factor Rrp47/DNA strand repair C1D
    IPR007146 Sas10/Utp3/C1D
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
Other
Accession IDs
less
MGI:1923569, MGI:2144327
References
more
  • Summaries
    All 27
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory