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Rab13
Gene Detail
 Symbol
Name
ID
Rab13
RAB13, member RAS oncogene family
MGI:1927232
Synonyms 0610007N03Rik, B230212B15Rik
Feature Type protein coding gene
Genetic Map
Chromosome 3
39.21 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:90213695-90226385 bp, + strand
From VEGA annotation of GRCm38

  12691 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:113882  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab13

Human
homologs
Human Homolog RAB13, RAB13, member RAS oncogene family
NCBI Gene ID 5872
neXtProt AC  NX_P51153
Human Chr (Location)  1q21.2; chr1:153981617-153986377 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(35) : Gene trapped(32) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rab13 interacts with 118 markers (Mir7-1, Mir15b, Mir16-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (51 annotations)
Process cellular response to insulin stimulus, cortical actin cytoskeleton organization, ...
Component cell, cell-cell junction, ...
Function GTPase activity, GTP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (93)    Tissues (22)    Images (36)
Theiler Stages: 2, 3, 4, 5, 23, 28
Assay TypeResults
Immunohistochemistry 7
RNA in situ 72
Western blot 6
RT-PCR 8
cDNA source data(24)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(25) cDNA(24) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000021948 (Evidence)
Ensembl Gene ModelENSMUSG00000027935 (Evidence)
Entrez Gene68328 (Evidence)
UniGene29355
DFCITC1583875, TC1606806, TC1608067
DoTSDT.101712022, DT.40140206, DT.488338
NIA Mouse Gene IndexU003486
Consensus CDS ProjectCCDS17522.1
International Mouse Knockout Project StatusRab13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021948 VEGA Gene Model | MGI Sequence Detail 12691 C57BL/6J ±  kb
transcript OTTMUST00000052099 VEGA | MGI Sequence Detail 1107 Not Applicable 
polypeptide OTTMUSP00000024637 VEGA | MGI Sequence Detail 202 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(5) UniProt(3)
Polymorphisms SNPs within 2kb(61 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013585 ras-related protein Rab-13
References (Earliest) J:65401 Sheth B, et al., Differentiation of the epithelial apical junctional complex during mouse preimplantation development: a role for rab13 in the early maturation of the tight junction. Mech Dev. 2000 Oct;97(1-2):93-104
(Latest) J:211898 Sato T, et al., Rab8a and Rab8b are essential for several apical transport pathways but insufficient for ciliogenesis. J Cell Sci. 2014 Jan 15;127(Pt 2):422-31
All references(36)
Other
accession IDs
MGI:1915578, MGI:1924746

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory