Rab13
Gene Detail

Symbol Name ID

Rab13 RAB13, member RAS oncogene family MGI:1927232

Synonyms

0610007N03Rik, B230212B15Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 3

39.21 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr3:90213695-90226385 bp, + strand From VEGA annotation of GRCm38   12691 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:113882  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab13

Human homologs

Human Homolog		RAB13, RAB13, member RAS oncogene family
NCBI Gene ID		5872
neXtProt AC		NX_P51153
Human Chr (Location)		1q21.2; chr1:153954127-153958806 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(35) : Targeted(3) Gene trapped(32)

Gene Ontology (GO) classifications

All GO classifications: (21 annotations)

Process	GTP catabolic process, intracellular protein transport, ...
Component	cell-cell junction, cell junction, ...
Function	GTPase activity, GTP binding, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (101)    Tissues (22)    Images (36)
Theiler Stages: 2, 3, 4, 5, 23, 28

Assay Type	Results
Immunohistochemistry	7
RNA in situ	72
Western blot	8
RT-PCR	14

cDNA source data(24)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(25) cDNA(24) Primer pair(1)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000021948 (Evidence)
Ensembl Gene Model	ENSMUSG00000027935 (Evidence)
Entrez Gene	68328 (Evidence)
UniGene	29355
DFCI	TC1583875, TC1606806, TC1608067
DoTS	DT.101712022, DT.40140206, DT.488338
NIA Mouse Gene Index	U003486
Consensus CDS Project	CCDS17522.1
International Mouse Knockout Project Status	Rab13

Sequences

Length	Strain/Species
genomic	OTTMUSG00000021948	VEGA Gene Model | MGI Sequence Detail	12691	C57BL/6J
transcript	OTTMUST00000052099	VEGA | MGI Sequence Detail	1107	Not Applicable
polypeptide	OTTMUSP00000024637	VEGA | MGI Sequence Detail	202	Not Applicable

All sequences(30) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(18 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001806	Small GTPase superfamily
InterPro	IPR003579	Small GTPase superfamily, Rab type
InterPro	IPR005225	Small GTP-binding protein domain
Protein Ontology	PR:000013585	ras-related protein Rab-13

References

(Earliest) J:65401 Sheth B, et al., Differentiation of the epithelial apical junctional complex during mouse preimplantation development: a role for rab13 in the early maturation of the tight junction. Mech Dev. 2000 Oct;97(1-2):93-104
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)

Other accession IDs

MGI:1915578, MGI:1924746