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Spata5
Gene Detail
Symbol

Name
ID
Spata5
spermatogenesis associated 5
MGI:1927170
Synonyms
2510048F20Rik, C78064, Spaf
Feature Type
protein coding gene
Genetic Map
Chromosome 3
18.46 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr3:37419896-37579096 bp, + strand
From VEGA annotation of GRCm38

  159201 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56920  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SPATA5
Protein SuperFamily: AAA ATPase, Nsf/Cdc48/Vcp types
Gene Tree: Spata5

Human
homologs
SPATA5, spermatogenesis associated 5
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 166378
neXtProt AC: NX_Q8NB90

Human Synonyms: AFG2, SPAF

Human Chr (Location): 4q28.1; chr4:122923070-123319450 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(24) : Gene trapped(21) Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Spata5 interacts with 58 markers (Mir16-1, Mir18, Mir18b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process cell differentiation, multicellular organismal development, ...
Component cytoplasm, mitochondrion
Function ATP binding, nucleotide binding
External Resources: FuncBase
Expression
cDNA source data(58)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase spata5    NEW 
Molecular
reagents
All nucleic(58) cDNA(58)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000007434 (Evidence)
Ensembl Gene Model ENSMUSG00000027722 (Evidence)
Entrez Gene 57815 (Evidence)
UniGene 172679
DFCI TC1576858, TC1612685
NIA Mouse Gene Index U003173
Consensus CDS Project CCDS17321.1, CCDS50895.1
International Mouse Phenotyping Consortium Status Spata5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007434 VEGA Gene Model | MGI Sequence Detail 159201 C57BL/6J ±  kb
transcript OTTMUST00000017179 VEGA | MGI Sequence Detail 3295 Not Applicable 
polypeptide OTTMUSP00000007939 VEGA | MGI Sequence Detail 893 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(1309 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1335)
Protein-related
information
ResourceIDDescription
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR009010 Aspartate decarboxylase-like domain
InterPro IPR003960 ATPase, AAA-type, conserved site
InterPro IPR003959 ATPase, AAA-type, core
InterPro IPR003338 CDC48, N-terminal subdomain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
Protein Ontology PR:000015492 spermatogenesis-associated protein 5
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1921459, MGI:2140053

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory