Spata5
Gene Detail

Symbol Name ID

Spata5 spermatogenesis associated 5 MGI:1927170

Synonyms

2510048F20Rik, C78064, Spaf

Feature Type

protein coding gene

Genetic Map

Chromosome 3

18.46 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr3:37419896-37579096 bp, + strand From VEGA annotation of GRCm38   159201 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:56920  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: AAA ATPase, Nsf/Cdc48/Vcp types
Gene Tree: Spata5

Human homologs

Human Homolog		SPATA5, spermatogenesis associated 5
NCBI Gene ID		166378
neXtProt AC		NX_Q8NB90
Human Synonyms		AFG2, SPAF
Human Chr (Location)		4q28.1; chr4:123844225-124240605 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(23) : Targeted(2) Gene trapped(21)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	cell differentiation, multicellular organismal development, ...
Component	cytoplasm, mitochondrion
Function	ATP binding, nucleoside-triphosphatase activity, ...

External Resources: FuncBase

Expression

cDNA source data(57)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(57) cDNA(57)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000007434 (Evidence)
Ensembl Gene Model	ENSMUSG00000027722 (Evidence)
Entrez Gene	57815 (Evidence)
UniGene	172679
DFCI	TC1576858, TC1612685
NIA Mouse Gene Index	U003173
Consensus CDS Project	CCDS17321.1, CCDS50895.1
International Mouse Knockout Project Status	Spata5

Sequences

Length	Strain/Species
genomic	OTTMUSG00000007434	VEGA Gene Model | MGI Sequence Detail	159201	C57BL/6J
transcript	OTTMUST00000017179	VEGA | MGI Sequence Detail	3295	Not Applicable
polypeptide	OTTMUSP00000007939	VEGA | MGI Sequence Detail	893	Not Applicable

All sequences(42) RefSeq(4) UniProt(3)

Polymorphisms

SNPs(943 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR003593	AAA+ ATPase domain
InterPro	IPR009010	Aspartate decarboxylase-like domain
InterPro	IPR003960	ATPase, AAA-type, conserved site
InterPro	IPR003959	ATPase, AAA-type, core
InterPro	IPR003338	CDC48, N-terminal subdomain
InterPro	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Protein Ontology	PR:000015492	spermatogenesis-associated protein 5

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(37)

Other accession IDs

MGI:1921459, MGI:2140053