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Spata5
Gene Detail
 Symbol
Name
ID
Spata5
spermatogenesis associated 5
MGI:1927170
Synonyms 2510048F20Rik, C78064, Spaf
Feature Type protein coding gene
Genetic Map
Chromosome 3
18.46 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr3:37419896-37579096 bp, + strand
From VEGA annotation of GRCm38

  159201 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56920  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: AAA ATPase, Nsf/Cdc48/Vcp types
Gene Tree: Spata5

Human
homologs
Human Homolog SPATA5, spermatogenesis associated 5
NCBI Gene ID 166378
neXtProt AC  NX_Q8NB90
Human Synonyms  AFG2, SPAF
Human Chr (Location)  4q28.1; chr4:122923070-123319450 (+)  GRCh38
Alleles
and
phenotypes
All alleles(23) : Targeted(2) Gene trapped(21)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell differentiation, multicellular organismal development, ...
Component cytoplasm, mitochondrion
Function ATP binding, nucleoside-triphosphatase activity, ...
External Resources: FuncBase
Expression
cDNA source data(58)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(58) cDNA(58)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000007434 (Evidence)
Ensembl Gene ModelENSMUSG00000027722 (Evidence)
Entrez Gene57815 (Evidence)
UniGene172679
DFCITC1576858, TC1612685
NIA Mouse Gene IndexU003173
Consensus CDS ProjectCCDS17321.1, CCDS50895.1
International Mouse Knockout Project StatusSpata5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007434 VEGA Gene Model | MGI Sequence Detail 159201 C57BL/6J ±  kb
transcript OTTMUST00000017179 VEGA | MGI Sequence Detail 3295 Not Applicable 
polypeptide OTTMUSP00000007939 VEGA | MGI Sequence Detail 893 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(8) UniProt(3)
Polymorphisms SNPs within 2kb(1309 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1335)
Protein-related
information
ResourceIDDescription
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR009010 Aspartate decarboxylase-like domain
InterPro IPR003960 ATPase, AAA-type, conserved site
InterPro IPR003959 ATPase, AAA-type, core
InterPro IPR003338 CDC48, N-terminal subdomain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
Protein Ontology PR:000015492 spermatogenesis-associated protein 5
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(37)
Other
accession IDs
MGI:1921459, MGI:2140053

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory