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Ctdp1
Gene Detail
 Symbol
Name
ID
Ctdp1
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
MGI:1926953
Synonyms 4930563P03Rik
Feature Type protein coding gene
Genetic Map
Chromosome 18
53.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr18:80407959-80469695 bp, - strand
From VEGA annotation of GRCm38

  61737 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31254  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ctdp1

Human
homologs
Human Homolog CTDP1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
NCBI Gene ID 9150
neXtProt AC  NX_Q9Y5B0
Human Synonyms  CCFDN, FCP1
Human Chr (Location)  18q23; chr18:79679801-79754510 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human CTDP1
Alleles
and
phenotypes
All alleles(9) : Gene trapped(6) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process cell cycle, cell division, ...
Component actin cytoskeleton, centrosome, ...
Function CTD phosphatase activity, hydrolase activity, ...
External Resources: FuncBase
Expression
cDNA source data(51)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(51) cDNA(51)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000031152 (Evidence)
Ensembl Gene ModelENSMUSG00000033323 (Evidence)
Entrez Gene67655 (Evidence)
UniGene312893
DFCITC1577884, TC1620479, TC1730558
DoTSDT.531870, DT.40152840, DT.91352221, DT.94333062
NIA Mouse Gene IndexU038607, U209666
EC3.1.3.16
Consensus CDS ProjectCCDS29368.1
International Mouse Knockout Project StatusCtdp1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031152 VEGA Gene Model | MGI Sequence Detail 61737 C57BL/6J ±  kb
transcript OTTMUST00000077168 VEGA | MGI Sequence Detail 3713 Not Applicable 
polypeptide OTTMUSP00000040750 VEGA | MGI Sequence Detail 960 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(6) UniProt(3)
Polymorphisms SNPs within 2kb(650 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001357 BRCT domain
InterPro IPR015388 FCP1-like phosphatase, C-terminal
InterPro IPR011947 FCP1-like phosphatase, phosphatase domain
InterPro IPR023214 HAD-like domain
InterPro IPR004274 NLI interacting factor
InterPro IPR011053 Single hybrid motif
Protein Ontology PR:000005999 RNA polymerase II subunit A C-terminal domain phosphatase
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1914905, MGI:2147375

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory