Ctdp1
Gene Detail

Symbol Name ID

Ctdp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 MGI:1926953

Synonyms

4930563P03Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 18

53.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr18:80407959-80469695 bp, - strand From VEGA annotation of GRCm38   61737 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:31254  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ctdp1

Human homologs

Human Homolog		CTDP1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
NCBI Gene ID		9150
neXtProt AC		NX_Q9Y5B0
Human Synonyms		CCFDN, FCP1
Human Chr (Location)		18q23; chr18:77439801-77514510 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human CTDP1

Alleles and phenotypes

All alleles(9) : Targeted(3) Gene trapped(6)

Gene Ontology (GO) classifications

All GO classifications: (20 annotations)

Process	cell cycle, cell division, ...
Component	actin cytoskeleton, centrosome, ...
Function	CTD phosphatase activity, hydrolase activity, ...

External Resources: FuncBase

Expression

cDNA source data(51)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(51) cDNA(51)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000031152 (Evidence)
Ensembl Gene Model	ENSMUSG00000033323 (Evidence)
Entrez Gene	67655 (Evidence)
UniGene	312893
DFCI	TC1577884, TC1620479, TC1730558
DoTS	DT.40152840, DT.531870, DT.91352221, DT.94333062
NIA Mouse Gene Index	U038607, U209666
EC	3.1.3.16
Consensus CDS Project	CCDS29368.1
International Mouse Knockout Project Status	Ctdp1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000031152	VEGA Gene Model | MGI Sequence Detail	61737	C57BL/6J
transcript	OTTMUST00000077168	VEGA | MGI Sequence Detail	3713	Not Applicable
polypeptide	OTTMUSP00000040750	VEGA | MGI Sequence Detail	960	Not Applicable

All sequences(43) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(551 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001357	BRCT domain
InterPro	IPR015388	FCP1-like phosphatase, C-terminal
InterPro	IPR011947	FCP1-like phosphatase, phosphatase domain
InterPro	IPR023214	HAD-like domain
InterPro	IPR004274	NLI interacting factor
Protein Ontology	PR:000005999	RNA polymerase II subunit A C-terminal domain phosphatase

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Other accession IDs

MGI:1914905, MGI:2147375