About   Help   FAQ
Ctdp1 Gene Detail
Summary
  • Symbol
    Ctdp1
  • Name
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
  • Synonyms
    4930563P03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926953
    NCBI Gene: 67655
  • Gene Overview
    MyGene.info: CTDP1
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:80407959-80469695 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 53.48 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    657 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926953
protein coding gene Chr18:80407959-80476229 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024596
protein coding gene Chr18:81339850-81402505 (-)
A/J MGP_AJ_G0024563
protein coding gene Chr18:77769610-77831622 (-)
AKR/J MGP_AKRJ_G0024534
protein coding gene Chr18:80100821-80162568 (-)
BALB/cJ MGP_BALBcJ_G0024561
protein coding gene Chr18:77952682-78014504 (-)
C3H/HeJ MGP_C3HHeJ_G0024330
protein coding gene Chr18:80183604-80245338 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025008
protein coding gene Chr18:83419887-83482654 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022439
protein coding gene Chr18:76625036-76686615 (-)
CAST/EiJ MGP_CASTEiJ_G0023803
protein coding gene Chr18:80520583-80583477 (-)
CBA/J MGP_CBAJ_G0024300
protein coding gene Chr18:86467603-86531017 (-)
DBA/2J MGP_DBA2J_G0024430
protein coding gene Chr18:77315140-77377061 (-)
FVB/NJ MGP_FVBNJ_G0024396
protein coding gene Chr18:76636374-76699875 (-)
LP/J MGP_LPJ_G0024514
protein coding gene Chr18:81200001-81262707 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024426
protein coding gene Chr18:87719865-87781704 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025057
protein coding gene Chr18:80239324-80302214 (-)
PWK/PhJ MGP_PWKPhJ_G0023548
protein coding gene Chr18:77720451-77782550 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023354
protein coding gene Chr18:80424529-80487219 (-)
WSB/EiJ MGP_WSBEiJ_G0023865
protein coding gene Chr18:80192170-80255337 (-)



Homology
more
  • Human Ortholog
    CTDP1, CTD phosphatase subunit 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CTDP1, CTD phosphatase subunit 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCFDN, FCP1
  • Links
    NCBI Gene ID: 9150
    neXtProt AC: NX_Q9Y5B0
    UniProt: Q9Y5B0

  • Chr Location
    18q23; chr18:79679801-79754510 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033323 Ensembl Gene Model | MGI Sequence Detail 61737 C57BL/6J ±  kb
transcript ENSMUST00000036229 Ensembl | MGI Sequence Detail 3713 Not Applicable  
polypeptide ENSMUSP00000038938 Ensembl | MGI Sequence Detail 960 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 53
    cDNA 53

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914905, MGI:2147375
References
more
  • Summaries
    All 38
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory