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Syt9
Gene Detail
Symbol

Name
ID
Syt9
synaptotagmin IX
MGI:1926373
Synonyms
Sytv
Feature Type
protein coding gene
Genetic Map
Chromosome 7
56.33 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:107370728-107548656 bp, + strand
From VEGA annotation of GRCm38

  177929 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11062  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: SYT9
Protein SuperFamily: B/K protein/synaptotagmin
Gene Tree: Syt9

Human
homologs
SYT9, synaptotagmin IX
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 143425
neXtProt AC: NX_Q86SS6

Human Chr (Location): 11p15.4; chr11:7238796-7469045 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Mice homozygous for a null allele exhibit 50% embryonic lethality while cre-mediated removal of a conditional allele impairs inhibitions of postsynaptic currents.
 
Interactions
Syt9 interacts with 302 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (5 records)
Data Summary: Results (46)    Tissues (5)    Images (18)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 46
cDNA source data(22)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase syt9 ; ZFIN syt9a    NEW 
Molecular
reagents
All nucleic(22) cDNA(22)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000031453 (Evidence)
Ensembl Gene Model ENSMUSG00000062542 (Evidence)
Entrez Gene 60510 (Evidence)
UniGene 302793
DFCI TC1581939
DoTS DT.40154139
Consensus CDS Project CCDS40078.1
International Mouse Phenotyping Consortium Status Syt9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031453 VEGA Gene Model | MGI Sequence Detail 177929 C57BL/6J ±  kb
transcript OTTMUST00000077942 VEGA | MGI Sequence Detail 3817 Not Applicable 
polypeptide OTTMUSP00000041329 VEGA | MGI Sequence Detail 491 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(5) UniProt(3)
Polymorphisms
SNPs within 2kb(1938 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1940)
Protein-related
information
ResourceIDDescription
InterPro IPR000008 C2 calcium-dependent membrane targeting
InterPro IPR001565 Synaptotagmin
Protein Ontology PR:000015911 synaptotagmin-9
References
(Earliest) J:62060 Fukuda M, et al., Conserved N-terminal cysteine motif is essential for homo- and heterodimer formation of synaptotagmins III, V, VI, and X. J Biol Chem. 1999 Oct 29;274(44):31421-7
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory