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Syt9 Gene Detail
Summary
  • Symbol
    Syt9
  • Name
    synaptotagmin IX
  • Synonyms
    Sytv
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926373
    NCBI Gene: 60510
  • Gene Overview
    MyGene.info: SYT9
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:107370728-107548656 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 56.33 cM, cytoband F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1925 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926373
protein coding gene Chr7:107370705-107548656 (.)
129S1/SvImJ MGP_129S1SvImJ_G0032795
protein coding gene Chr7:110704052-110880380 (+)
A/J MGP_AJ_G0032776
protein coding gene Chr7:107949071-108127163 (+)
AKR/J MGP_AKRJ_G0032708
protein coding gene Chr7:110662397-110846579 (+)
BALB/cJ MGP_BALBcJ_G0032782
protein coding gene Chr7:107657036-107832593 (+)
C3H/HeJ MGP_C3HHeJ_G0032491
protein coding gene Chr7:110675698-110856193 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033287
protein coding gene Chr7:115285458-115469445 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030265
protein coding gene Chr7:109621236-109789317 (+)
CAST/EiJ MGP_CASTEiJ_G0031822
protein coding gene Chr7:102285645-102478282 (+)
CBA/J MGP_CBAJ_G0032466
protein coding gene Chr7:119069084-119263598 (+)
DBA/2J MGP_DBA2J_G0032617
protein coding gene Chr7:106087377-106261475 (+)
FVB/NJ MGP_FVBNJ_G0032569
protein coding gene Chr7:105933544-106120090 (+)
LP/J MGP_LPJ_G0032709
protein coding gene Chr7:112296458-112477306 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032603
protein coding gene Chr7:120691601-120885922 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033306
protein coding gene Chr7:109732803-109909857 (+)
PWK/PhJ MGP_PWKPhJ_G0031528
protein coding gene Chr7:98964263-99139035 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031378
protein coding gene Chr7:96326610-96502810 (+)
WSB/EiJ MGP_WSBEiJ_G0031937
protein coding gene Chr7:110471692-110658820 (+)



Homology
more
  • Human Ortholog
    SYT9, synaptotagmin 9
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SYT9, synaptotagmin 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 143425
    neXtProt AC: NX_Q86SS6
    UniProt: Q86SS6

  • Chr Location
    11p15.4; chr11:7238784-7470032 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Mice homozygous for a null allele exhibit 50% embryonic lethality while cre-mediated removal of a conditional allele impairs inhibitions of postsynaptic currents.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062542 Ensembl Gene Model | MGI Sequence Detail 177929 C57BL/6J ±  kb
transcript ENSMUST00000073459 Ensembl | MGI Sequence Detail 3817 Not Applicable  
polypeptide ENSMUSP00000073164 Ensembl | MGI Sequence Detail 491 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 3
References
more
  • Summaries
    All 46
    Developmental Gene Expression 5
    Gene Ontology 10
    Phenotypes 13
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:227627 Roper LK, et al., Sex-specific regulation of follicle-stimulating hormone secretion by synaptotagmin 9. Nat Commun. 2015;6:8645

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory