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Syt5
Gene Detail
Symbol

Name
ID
Syt5
synaptotagmin V
MGI:1926368
Synonyms
SytIX
Feature Type
protein coding gene
Genetic Map
Chromosome 7
2.62 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:4539768-4546567 bp, - strand
From Ensembl annotation of GRCm38

  6800 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55722  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog

HCOP human homology predictions: SYT5
Protein SuperFamily: B/K protein/synaptotagmin
Gene Tree: Syt5

Human
homologs
SYT5, synaptotagmin V
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 6861
neXtProt AC: NX_O00445

Human Chr (Location): 19q; chr19:55173096-55180441 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
About 50% of mice homozygous for a knock-out allele exhibit prenatal lethality.
 
Interactions
Syt5 interacts with 70 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (198)    Tissues (108)    Images (35)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 198
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase syt5 ; ZFIN syt5a, syt5b    NEW 
Molecular
reagents
All nucleic(17) cDNA(16) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000004961 (Evidence)
Entrez Gene 53420 (Evidence)
UniGene 358663
DFCI TC1578504
DoTS DT.527097
NIA Mouse Gene Index U028088
Consensus CDS Project CCDS20738.1
International Mouse Phenotyping Consortium Status Syt5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000004961 Ensembl Gene Model | MGI Sequence Detail 6800 C57BL/6J ±  kb
transcript ENSMUST00000065957 Ensembl | MGI Sequence Detail 1747 Not Applicable 
polypeptide ENSMUSP00000070322 Ensembl | MGI Sequence Detail 386 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(57 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000008 C2 calcium-dependent membrane targeting
InterPro IPR001565 Synaptotagmin
Protein Ontology PR:000015907 synaptotagmin-5
References
(Earliest) J:1973 Willison K, The mouse Brachyury gene and mesoderm formation. Trends Genet. 1990 Apr;6(4):104-5
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory