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Stx6 Gene Detail
Summary
  • Symbol
    Stx6
  • Name
    syntaxin 6
  • Synonyms
    2310039E05Rik, 2410005I16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926235
    NCBI Gene: 58244
  • Gene Overview
    MyGene.info: STX6
Location & Maps
more
  • Sequence Map
    Chr1:155158715-155208256 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      49542 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    STX6, syntaxin 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    STX6, syntaxin 6
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 10228
    neXtProt AC: NX_O43752

  • Chr Location
    1q25.3; chr1:180949690-181023121 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    2
  • Genomic Mutations
    2 involving Stx6
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049966 VEGA Gene Model | MGI Sequence Detail 49542 C57BL/6J ±  kb
transcript OTTMUST00000127155 VEGA | MGI Sequence Detail 4589 Not Applicable  
polypeptide OTTMUSP00000068675 VEGA | MGI Sequence Detail 255 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    360 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 7
Other
Accession IDs
less
MGI:1915516, MGI:1916870, MGI:2138226, MGI:2138343, MGI:3035316
References
more
  • Summaries
    All 42
    Developmental Gene Expression 2
    Gene Ontology 18
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:225569 Schindler C, et al., EARP is a multisubunit tethering complex involved in endocytic recycling. Nat Cell Biol. 2015 May;17(5):639-50

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory