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Stx6
Gene Detail
Symbol

Name
ID
Stx6
syntaxin 6
MGI:1926235
Synonyms
2310039E05Rik, 2410005I16Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 1
66.46 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:155158715-155208256 bp, + strand
From VEGA annotation of GRCm38

  49542 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:115622  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: STX6
Protein SuperFamily: syntaxin10/6
Gene Tree: Stx6

Human
homologs
STX6, syntaxin 6
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10228
neXtProt AC: NX_O43752

Human Chr (Location): 1q25.3; chr1:180949690-181023121 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Stx6 interacts with 215 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (34 annotations)
Process endosome organization, Golgi ribbon formation, ...
Component early endosome, Golgi apparatus, ...
Function protein binding, SNAP receptor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
cDNA source data(17)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase stx6 ; ZFIN stx6    NEW 
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000049966 (Evidence)
Ensembl Gene Model ENSMUSG00000026470 (Evidence)
Entrez Gene 58244 (Evidence)
DFCI TC1572812, TC1645230, TC1704198, TC1593833
NIA Mouse Gene Index U000939
Consensus CDS Project CCDS35741.1
International Mouse Phenotyping Consortium Status Stx6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049966 VEGA Gene Model | MGI Sequence Detail 49542 C57BL/6J ±  kb
transcript OTTMUST00000127156 VEGA | MGI Sequence Detail 955 Not Applicable 
polypeptide OTTMUSP00000068676 VEGA | MGI Sequence Detail 255 Not Applicable 

For the selected sequences
All sequences(81) RefSeq(4) UniProt(7)
Polymorphisms
SNPs within 2kb(361 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR015260 Syntaxin 6, N-terminal
InterPro IPR006012 Syntaxin/epimorphin, conserved site
InterPro IPR000727 Target SNARE coiled-coil domain
InterPro IPR010989 t-SNARE
Protein Ontology PR:000015798 syntaxin-6
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:201362 Morawski M, et al., Cellular and ultra structural evidence for cytoskeletal localization of prolyl endopeptidase-like protein in neurons. Neuroscience. 2013 Jul 9;242:128-39
All references(42)
Other
accession IDs
MGI:1915516, MGI:1916870, MGI:2138226, MGI:2138343, MGI:3035316

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory