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Avl9 Gene Detail
Summary
  • Symbol
    Avl9
  • Name
    AVL9 cell migration associated
  • Synonyms
    5830411G16Rik, D730049P16Rik, mKIAA0241
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926187
    NCBI Gene: 78937
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:56714905-56761912 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 27.72 cM, cytoband C1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    249 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926187
protein coding gene Chr6:56714899-56761912 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030780
protein coding gene Chr6:56175638-56219063 (+)
A/J MGP_AJ_G0030749
protein coding gene Chr6:53570203-53615762 (+)
AKR/J MGP_AKRJ_G0030676
protein coding gene Chr6:55367642-55410218 (+)
BALB/cJ MGP_BALBcJ_G0030761
protein coding gene Chr6:53953691-53999325 (+)
C3H/HeJ MGP_C3HHeJ_G0030474
protein coding gene Chr6:55418880-55469470 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031216
protein coding gene Chr6:57443448-57488143 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028422
protein coding gene Chr6:51133279-51178756 (+)
CAST/EiJ MGP_CASTEiJ_G0029877
protein coding gene Chr6:55258338-55304822 (+)
CBA/J MGP_CBAJ_G0030448
protein coding gene Chr6:59803842-59854741 (+)
DBA/2J MGP_DBA2J_G0030598
protein coding gene Chr6:53452914-53500372 (+)
FVB/NJ MGP_FVBNJ_G0030550
protein coding gene Chr6:53047521-53093249 (+)
LP/J MGP_LPJ_G0030683
protein coding gene Chr6:56098732-56142682 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030584
protein coding gene Chr6:62249465-62298784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031246
protein coding gene Chr6:55341877-55384404 (+)
PWK/PhJ MGP_PWKPhJ_G0029590
protein coding gene Chr6:53135416-53181332 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029424
protein coding gene Chr6:54744576-54792656 (+)
WSB/EiJ MGP_WSBEiJ_G0029954
protein coding gene Chr6:55401012-55446046 (+)



Homology
more
  • Human Ortholog
    AVL9, AVL9 cell migration associated
  • Vertebrate Orthologs
    10
  • Human Ortholog
    AVL9, AVL9 cell migration associated
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KIAA0241
  • Links
    NCBI Gene ID: 23080
    neXtProt AC: NX_Q8NBF6
    UniProt: Q8NBF6

  • Chr Location
    7p14.3; chr7:32495426-32588741 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 62425
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: AVL9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78937 NCBI Gene Model | MGI Sequence Detail 47008 C57BL/6J ±  kb
transcript NM_030235 RefSeq | MGI Sequence Detail 6691 C57BL/6  
polypeptide Q80U56 UniProt | EBI | MGI Sequence Detail 649 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:1915379
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory