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Chsy3 Gene Detail
Summary
  • Symbol
    Chsy3
  • Name
    chondroitin sulfate synthase 3
  • Synonyms
    4833446K15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926173
    NCBI Gene: 78923
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:59175401-59410446 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 33.93 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2214 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926173
protein coding gene Chr18:59175340-59411336 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024457
protein coding gene Chr18:58764036-59012082 (+)
A/J MGP_AJ_G0024423
protein coding gene Chr18:56367098-56609507 (+)
AKR/J MGP_AKRJ_G0024393
protein coding gene Chr18:57914088-58167161 (+)
BALB/cJ MGP_BALBcJ_G0024423
protein coding gene Chr18:56518574-56755348 (+)
C3H/HeJ MGP_C3HHeJ_G0024190
protein coding gene Chr18:58136488-58387493 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024869
protein coding gene Chr18:60571128-60819920 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022301
protein coding gene Chr18:55907512-56147363 (+)
CAST/EiJ MGP_CASTEiJ_G0023664
protein coding gene Chr18:58156732-58534265 (+)
CBA/J MGP_CBAJ_G0024160
protein coding gene Chr18:62538493-62811042 (+)
DBA/2J MGP_DBA2J_G0024290
protein coding gene Chr18:56067782-56308360 (+)
FVB/NJ MGP_FVBNJ_G0024257
protein coding gene Chr18:55435658-55671170 (+)
LP/J MGP_LPJ_G0024375
protein coding gene Chr18:58673510-58931922 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024287
protein coding gene Chr18:64041591-64323649 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024916
protein coding gene Chr18:58059774-58298734 (+)
PWK/PhJ MGP_PWKPhJ_G0023408
protein coding gene Chr18:56093688-56447199 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023214
protein coding gene Chr18:58119897-58372520 (+)
WSB/EiJ MGP_WSBEiJ_G0023727
protein coding gene Chr18:57951293-58195149 (+)



Homology
more
  • Human Ortholog
    CHSY3, chondroitin sulfate synthase 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CHSY3, chondroitin sulfate synthase 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CHSY2, CSS3
  • Links
    NCBI Gene ID: 337876
    neXtProt AC: NX_Q70JA7
    UniProt: Q70JA7

  • Chr Location
    5q23.3; chr5:129903415-130186637 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058152 Ensembl Gene Model | MGI Sequence Detail 235046 C57BL/6J ±  kb
transcript ENSMUST00000080721 Ensembl | MGI Sequence Detail 2931 Not Applicable  
polypeptide ENSMUSP00000079546 Ensembl | MGI Sequence Detail 884 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2147256
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory