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Trim42 Gene Detail
Summary
  • Symbol
    Trim42
  • Name
    tripartite motif-containing 42
  • Synonyms
    4930486B16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926161
    NCBI Gene: 78911
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:97349562-97369958 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 51.06 cM, cytoband E4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    272 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926161
protein coding gene Chr9:97349562-97369958 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035150
protein coding gene Chr9:98604650-98626553 (-)
A/J MGP_AJ_G0035132
protein coding gene Chr9:95152766-95172864 (-)
AKR/J MGP_AKRJ_G0035063
protein coding gene Chr9:97451373-97471450 (-)
BALB/cJ MGP_BALBcJ_G0035124
protein coding gene Chr9:94830394-94851295 (-)
C3H/HeJ MGP_C3HHeJ_G0034834
protein coding gene Chr9:97873034-97900661 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035644
protein coding gene Chr9:101419713-101443555 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032544
protein coding gene Chr9:92948015-92968840 (-)
CAST/EiJ MGP_CASTEiJ_G0034146
protein coding gene Chr9:97662959-97683430 (-)
CBA/J MGP_CBAJ_G0034802
protein coding gene Chr9:104950144-104970627 (-)
DBA/2J MGP_DBA2J_G0034964
protein coding gene Chr9:94663370-94684147 (-)
FVB/NJ MGP_FVBNJ_G0034912
protein coding gene Chr9:93500092-93523263 (-)
LP/J MGP_LPJ_G0035043
protein coding gene Chr9:98866565-98893710 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034951
protein coding gene Chr9:106915337-106938110 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035666
protein coding gene Chr9:97704590-97731109 (-)
PWK/PhJ MGP_PWKPhJ_G0033853
protein coding gene Chr9:94855811-94877514 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033688
protein coding gene Chr9:97746142-97770803 (-)
WSB/EiJ MGP_WSBEiJ_G0034266
protein coding gene Chr9:97567776-97589207 (-)



Homology
more
  • Human Ortholog
    TRIM42, tripartite motif containing 42
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TRIM42, tripartite motif containing 42
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PPP1R40, T4A1
  • Links
    NCBI Gene ID: 287015
    neXtProt AC: NX_Q8IWZ5
    UniProt: Q8IWZ5

  • Chr Location
    3q23; chr3:140678024-140701150 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78911 NCBI Gene Model | MGI Sequence Detail 20397 C57BL/6J ±  kb
transcript NM_030219 RefSeq | MGI Sequence Detail 2465 C57BL/6  
polypeptide Q9D2H5 UniProt | EBI | MGI Sequence Detail 723 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory