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1500015O10Rik
Gene Detail
Symbol

Name
ID
1500015O10Rik
RIKEN cDNA 1500015O10 gene
MGI:1926146
Synonyms
Ecrg4
Feature Type
protein coding gene
Genetic Map
Chromosome 1
23.44 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:43730602-43742578 bp, + strand
From VEGA annotation of GRCm38

  11977 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11505  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: C2orf40
Gene Tree: 1500015O10Rik

Human
homologs
C2orf40, chromosome 2 open reading frame 40
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 84417
neXtProt AC: NX_Q9H1Z8

Human Synonyms: ECRG4

Human Chr (Location): 2q12.2; chr2:106063294-106078155 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
1500015O10Rik interacts with 15 markers (Mir127, Mir130a, Mir138-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process cellular senescence, G1 to G0 transition, ...
Component cytoplasmic vesicle, extracellular region, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (123)    Tissues (34)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 123
cDNA source data(21)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN ecrg4a    NEW 
Molecular
reagents
All nucleic(21) cDNA(21)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000020869 (Evidence)
Ensembl Gene Model ENSMUSG00000026051 (Evidence)
Entrez Gene 78896 (Evidence)
UniGene 50109
DFCI TC1582840
DoTS DT.527580
NIA Mouse Gene Index U000228
Consensus CDS Project CCDS14925.1
International Mouse Phenotyping Consortium Status 1500015O10Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000020869 VEGA Gene Model | MGI Sequence Detail 11977 C57BL/6J ±  kb
transcript OTTMUST00000049335 VEGA | MGI Sequence Detail 902 Not Applicable 
polypeptide OTTMUSP00000022833 VEGA | MGI Sequence Detail 148 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(145 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:199302 Veenvliet JV, et al., Specification of dopaminergic subsets involves interplay of En1 and Pitx3. Development. 2013 Aug;140(16):3373-84
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory