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Ncln Gene Detail
Summary
  • Symbol
    Ncln
  • Name
    nicalin
  • Synonyms
    3100002P13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926081
    NCBI Gene: 103425
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:81322083-81332226 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926081
 protein coding gene Chr10:81322083-81333178 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017561
 protein coding gene Chr10:82212044-82222187 (-)
A/J MGP_AJ_G0017539
 protein coding gene Chr10:79291710-79301853 (-)
AKR/J MGP_AKRJ_G0017500
 protein coding gene Chr10:81467325-81477468 (-)
BALB/cJ MGP_BALBcJ_G0017501
 protein coding gene Chr10:79514730-79524873 (-)
C3H/HeJ MGP_C3HHeJ_G0017324
 protein coding gene Chr10:81570436-81580579 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017955
 protein coding gene Chr10:85031210-85041353 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015644
 protein coding gene Chr10:75490083-75500208 (-)
CAST/EiJ MGP_CASTEiJ_G0016891
 protein coding gene Chr10:81811229-81821370 (-)
CBA/J MGP_CBAJ_G0017296
 protein coding gene Chr10:88365225-88375368 (-)
DBA/2J MGP_DBA2J_G0017402
 protein coding gene Chr10:78497446-78507589 (-)
FVB/NJ MGP_FVBNJ_G0017396
 protein coding gene Chr10:77757356-77767499 (-)
LP/J MGP_LPJ_G0017473
 protein coding gene Chr10:82659314-82669457 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017422
 protein coding gene Chr10:90192736-90202879 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017996
 protein coding gene Chr10:81480099-81490242 (-)
PWK/PhJ MGP_PWKPhJ_G0016672
 protein coding gene Chr10:78402201-78412312 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016462
 protein coding gene Chr10:80433239-80443109 (-)
WSB/EiJ MGP_WSBEiJ_G0016951
 protein coding gene Chr10:81526410-81536552 (-)



Homology
more
  • Human Ortholog
    NCLN, nicalin
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NCLN, nicalin
  • Synonyms
    NET59
  • Links
    NCBI Gene ID: 56926
    neXtProt AC: NX_Q969V3
    UniProt: Q969V3

  • Chr Location
    19p13.3; chr19:3185563-3209575 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    717
  • Tissues
    7
  • cDNA Data
    110
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020238 Ensembl Gene Model | MGI Sequence Detail 10144 C57BL/6J ±  kb
transcript ENSMUST00000020463 Ensembl | MGI Sequence Detail 3118 Not Applicable  
polypeptide ENSMUSP00000020463 Ensembl | MGI Sequence Detail 563 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 111
    cDNA 111

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143811
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:93300 Blackshaw S, et al., Genomic analysis of mouse retinal development. PLoS Biol. 2004 Oct;2(9):E247
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory