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Ttc30a1 Gene Detail
Summary
  • Symbol
    Ttc30a1
  • Name
    tetratricopeptide repeat domain 30A1
  • Synonyms
    4930506L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926052
    NCBI Gene: 78802
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:75979106-75981967 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 44.80 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926052
protein coding gene Chr2:75978247-75981967 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025861
protein coding gene Chr2:76366881-76371678 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0025807
protein coding gene Chr2:75355330-75363197 (-)
BALB/cJ MGP_BALBcJ_G0025833
protein coding gene Chr2:73528078-73565819 (-)
C3H/HeJ MGP_C3HHeJ_G0025593
protein coding gene Chr2:75567371-75571797 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026279
protein coding gene Chr2:78627108-78634626 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0025573
protein coding gene Chr2:81531412-81540616 (-)
DBA/2J MGP_DBA2J_G0025705
protein coding gene Chr2:72972099-72974917 (-)
FVB/NJ MGP_FVBNJ_G0025667
protein coding gene Chr2:72354113-72357874 (-)
LP/J MGP_LPJ_G0025793
protein coding gene Chr2:76202295-76207759 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025698
protein coding gene Chr2:83393845-83396978 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026336
protein coding gene Chr2:75494696-75498000 (-)
PWK/PhJ MGP_PWKPhJ_G0024798
protein coding gene Chr2:72934124-72938218 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024604
protein coding gene Chr2:75720066-75722100 (-)
WSB/EiJ MGP_WSBEiJ_G0025124
protein coding gene Chr2:75947244-75950988 (-)



Homology
more
  • Human Ortholog
    TTC30A, tetratricopeptide repeat domain 30A
  • Vertebrate Orthologs
    5
  • Human Ortholog
    TTC30A, tetratricopeptide repeat domain 30A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IFT70A, TTC30B
  • Links
    NCBI Gene ID: 92104
    neXtProt AC: NX_Q86WT1
    UniProt: Q86WT1

  • Chr Location
    2q31.2; chr2:177614298-177618966 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78802 NCBI Gene Model | MGI Sequence Detail 2862 C57BL/6J ±  kb
transcript NM_030188 RefSeq | MGI Sequence Detail 2862 C57BL/6  
polypeptide Q99J38 UniProt | EBI | MGI Sequence Detail 664 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory