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Zcchc4 Gene Detail
Summary
  • Symbol
    Zcchc4
  • Name
    zinc finger, CCHC domain containing 4
  • Synonyms
    4930449I23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926046
    NCBI Gene: 78796
Location & Maps
more
  • Sequence Map
    Chr5:52775409-52824665 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      49257 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 28.70 cM, cytoband C1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    ZCCHC4, zinc finger CCHC-type containing 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZCCHC4, zinc finger CCHC-type containing 4
    Orthology source: HomoloGene
  • Synonyms
    HSPC052, ZGRF4
  • Links
    NCBI Gene ID: 29063
    neXtProt AC: NX_Q9H5U6

  • Chr Location
    4p15.2; chr4:25312774-25373176 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    23 phenotype references
  • All Mutations and Alleles
    15
  • Chemically induced (other)
    2
  • Gene trapped
    7
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    4
  • Genomic Mutations
    4 involving Zcchc4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023333 VEGA Gene Model | MGI Sequence Detail 49257 C57BL/6J ±  kb
transcript OTTMUST00000056542 VEGA | MGI Sequence Detail 5743 Not Applicable  
polypeptide OTTMUSP00000027189 VEGA | MGI Sequence Detail 512 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    270 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000017607 zinc finger CCHC domain-containing protein 4
  • InterPro Domains
    IPR002052 DNA methylase, N-6 adenine-specific, conserved site
    IPR019369 Protein-lysine N-methyltransferase Efm5
    IPR001594 Zinc finger, DHHC-type, palmitoyltransferase
    IPR010666 Zinc finger, GRF-type
Molecular
Reagents
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  • All nucleic 21
    Genomic 1
    cDNA 19
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 23
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:202816 Wajapeyee N, et al., Oncogenic RAS directs silencing of tumor suppressor genes through ordered recruitment of transcriptional repressors. Genes Dev. 2013 Oct 15;27(20):2221-6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory