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Csgalnact2 Gene Detail
Summary
  • Symbol
    Csgalnact2
  • Name
    chondroitin sulfate N-acetylgalactosaminyltransferase 2
  • Synonyms
    4632415D10Rik, Galnact2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926002
    NCBI Gene: 78752
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:118107452-118139140 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 55.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926002
protein coding gene Chr6:118107452-118139140 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031183
protein coding gene Chr6:120846045-120877735 (-)
A/J MGP_AJ_G0031152
protein coding gene Chr6:116219046-116250524 (-)
AKR/J MGP_AKRJ_G0031083
protein coding gene Chr6:119347823-119372153 (-)
BALB/cJ MGP_BALBcJ_G0031163
protein coding gene Chr6:115997540-116031396 (-)
C3H/HeJ MGP_C3HHeJ_G0030546
protein coding gene Chr6:64914786-64947498 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031621
protein coding gene Chr6:123962988-123994677 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028783
protein coding gene Chr6:113147802-113182202 (-)
CAST/EiJ MGP_CASTEiJ_G0030270
protein coding gene Chr6:119726016-119759483 (-)
CBA/J MGP_CBAJ_G0030846
protein coding gene Chr6:128845195-128876887 (-)
DBA/2J MGP_DBA2J_G0031002
protein coding gene Chr6:115122281-115154011 (-)
FVB/NJ MGP_FVBNJ_G0030954
protein coding gene Chr6:114255132-114286763 (-)
LP/J MGP_LPJ_G0031081
protein coding gene Chr6:120874633-120908588 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030988
protein coding gene Chr6:132949681-132984559 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031650
protein coding gene Chr6:119375793-119407523 (-)
PWK/PhJ MGP_PWKPhJ_G0029985
protein coding gene Chr6:114137357-114169266 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029814
protein coding gene Chr6:118097746-118129932 (-)
WSB/EiJ MGP_WSBEiJ_G0030353
protein coding gene Chr6:119644033-119675756 (-)



Homology
more
  • Human Ortholog
    CSGALNACT2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CSGALNACT2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    beta4GalNAcT, ChGn-2, CHGN2, GALNACT2, GALNACT-2, PRO0082
  • Links
    NCBI Gene ID: 55454
    neXtProt AC: NX_Q8N6G5
    UniProt: Q8N6G5

  • Chr Location
    10q11.21; chr10:43138445-43185308 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    20 phenotypes from multigenic genotypes
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 78752 NCBI Gene Model | MGI Sequence Detail 31689 C57BL/6J ±  kb
transcript NM_001362149 RefSeq | MGI Sequence Detail 3748 C57BL/6  
polypeptide Q8C1F4 UniProt | EBI | MGI Sequence Detail 542 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    cDNA 28
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:256718 Shimbo M, et al., Postnatal lethality and chondrodysplasia in mice lacking both chondroitin sulfate N-acetylgalactosaminyltransferase-1 and -2. PLoS One. 2017;12(12):e0190333

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory