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Csgalnact2 Gene Detail
Summary
  • Symbol
    Csgalnact2
  • Name
    chondroitin sulfate N-acetylgalactosaminyltransferase 2
  • Synonyms
    4632415D10Rik, Galnact2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926002
    NCBI Gene: 78752
Location & Maps
more
  • Sequence Map
    Chr6:118107452-118139140 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      31689 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 55.86 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    CSGALNACT2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CSGALNACT2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
    Orthology source: HGNC, HomoloGene
  • Synonyms
    beta4GalNAcT, ChGn-2, CHGN2, GALNACT2, GALNACT-2, PRO0082
  • Links
    NCBI Gene ID: 55454
    neXtProt AC: NX_Q8N6G5

  • Chr Location
    10q11.21; chr10:43138445-43185308 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    5
  • Gene trapped
    1
  • Targeted
    4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022841 VEGA Gene Model | MGI Sequence Detail 31689 C57BL/6J ±  kb
transcript OTTMUST00000054907 VEGA | MGI Sequence Detail 3661 Not Applicable  
polypeptide OTTMUSP00000026228 VEGA | MGI Sequence Detail 542 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    106 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000005934 chondroitin sulfate N-acetylgalactosaminyltransferase 2
  • EC
  • InterPro Domains
    IPR008428 Chondroitin N-acetylgalactosaminyltransferase
    IPR029044 Nucleotide-diphospho-sugar transferases
Molecular
Reagents
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  • All nucleic 28
    cDNA 27
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 33
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:219334 Izumikawa T, et al., GlcUAbeta1-3Galbeta1-3Galbeta1-4Xyl(2-O-phosphate) Is the Preferred Substrate for Chondroitin N-Acetylgalactosaminyltransferase-1. J Biol Chem. 2015 Feb 27;290(9):5438-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory