Pramel13os Gene Detail

Summary

• Symbol
  Pramel13os
• Name
  PRAME like 13, opposite strand
• Synonyms
  D530049N12Rik, Pramef12os

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1925973
  NCBI Gene: 78723
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:144131438-144132871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 77.98 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925973	antisense lncRNA gene	Chr4:144131438-144132871 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003995	antisense lncRNA gene	Chr4:147765930-147767363 (+)
A/J	MGP_AJ_G0003976	antisense lncRNA gene	Chr4:141488317-141489750 (+)
AKR/J	MGP_AKRJ_G0003953	antisense lncRNA gene	Chr4:145468525-145469958 (+)
BALB/cJ	MGP_BALBcJ_G0003962	antisense lncRNA gene	Chr4:142141436-142142869 (+)
C3H/HeJ	MGP_C3HHeJ_G0003909	antisense lncRNA gene	Chr4:145918048-145919481 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004110	antisense lncRNA gene	Chr4:152775191-152776624 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003593	antisense lncRNA gene	Chr4:134184036-134185458 (+)
CAST/EiJ	MGP_CASTEiJ_G0003872	antisense lncRNA gene	Chr4:143992919-143994352 (+)
CBA/J	MGP_CBAJ_G0003902	antisense lncRNA gene	Chr4:157545189-157546622 (+)
DBA/2J	MGP_DBA2J_G0003918	antisense lncRNA gene	Chr4:141717095-141718528 (+)
FVB/NJ	MGP_FVBNJ_G0003937	antisense lncRNA gene	Chr4:140850171-140851604 (+)
LP/J	MGP_LPJ_G0003998	antisense lncRNA gene	Chr4:147827157-147828590 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003925	antisense lncRNA gene	Chr4:161106790-161108223 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004105	antisense lncRNA gene	Chr4:145934467-145935900 (+)
PWK/PhJ	MGP_PWKPhJ_G0003826	antisense lncRNA gene	Chr4:138197196-138198629 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003772	antisense lncRNA gene	Chr4:141210878-141212293 (+)
WSB/EiJ	MGP_WSBEiJ_G0003908	antisense lncRNA gene	Chr4:146196545-146197978 (+)

Homology

• Gene Tree
  Pramel13os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Targeted
  1
• Genomic Mutations
  2 involving Pramel13os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000028590 (Evidence)
• NCBI Gene
  78723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000028590	Ensembl Gene Model | MGI Sequence Detail	1434	C57BL/6J
transcript	ENSMUST00000133334	Ensembl | MGI Sequence Detail	767	Not Applicable
polypeptide	Q9CX08	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14