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Platr4 Gene Detail
Summary
  • Symbol
    Platr4
  • Name
    pluripotency associated transcript 4
  • Synonyms
    C430002E04Rik
  • Feature Type
    lincRNA gene
  • IDs
    MGI:1925956
    NCBI Gene: 78706
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:41487681-41493199 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 19.85 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925956
lincRNA gene Chr3:41484024-41493199 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006175
lincRNA gene Chr3:39489352-39498528 (-)
A/J MGP_AJ_G0006167
lincRNA gene Chr3:38523796-38532994 (-)
AKR/J MGP_AKRJ_G0006143
lincRNA gene Chr3:39254839-39263992 (-)
BALB/cJ MGP_BALBcJ_G0006143
lincRNA gene Chr3:38297141-38306317 (-)
C3H/HeJ MGP_C3HHeJ_G0006093
lincRNA gene Chr3:39373936-39383119 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006305
lincRNA gene Chr3:41118356-41127524 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005616
lincRNA gene Chr3:36030722-36039798 (-)
CAST/EiJ MGP_CASTEiJ_G0006028
lincRNA gene Chr3:39259808-39268932 (-)
CBA/J MGP_CBAJ_G0006078
lincRNA gene Chr3:42280824-42290002 (-)
DBA/2J MGP_DBA2J_G0006097
lincRNA gene Chr3:37989570-37998744 (-)
FVB/NJ MGP_FVBNJ_G0006121
lincRNA gene Chr3:37363580-37372743 (-)
LP/J MGP_LPJ_G0006179
lincRNA gene Chr3:40231566-40240732 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006111
lincRNA gene Chr3:44733016-44742184 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006309
lincRNA gene Chr3:39126263-39135439 (-)
PWK/PhJ MGP_PWKPhJ_G0005973
lincRNA gene Chr3:37670111-37679317 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005882
lincRNA gene Chr3:38790324-38799476 (-)
WSB/EiJ MGP_WSBEiJ_G0006075
lincRNA gene Chr3:39135744-39147625 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78706 NCBI Gene Model | MGI Sequence Detail 5519 C57BL/6J ±  kb
transcript NR_040385 RefSeq | MGI Sequence Detail 2168 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 21
    Diseases 1
    Phenotypes 8
  • Earliest
    J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory