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Pde6h
Gene Detail
Symbol

Name
ID
Pde6h
phosphodiesterase 6H, cGMP-specific, cone, gamma
MGI:1925850
Synonyms
A930033D18Rik, PDEgamma
Feature Type
protein coding gene
Genetic Map
Chromosome 6
66.72 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:136954523-136968865 bp, + strand
From VEGA annotation of GRCm38

  14343 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4522  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: 3',5'-cyclic-GMP phosphodiesterase, gamma subunit
Gene Tree: Pde6h

Human
homologs
Human Homolog PDE6H, phosphodiesterase 6H, cGMP-specific, cone, gamma
NCBI Gene ID 5149
neXtProt AC  NX_Q13956
Human Synonyms  ACHM6, RCD3
Human Chr (Location)  12p13; chr12:14973022-14981865 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human PDE6H
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pde6h interacts with 402 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Expression
Literature Summary: (4 records)
Data Summary: Results (98)    Tissues (95)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 98
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(9)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023391 (Evidence)
Ensembl Gene ModelENSMUSG00000064330 (Evidence)
Entrez Gene78600 (Evidence)
UniGene290622
DFCITC1587173, TC1607448, TC1709846
DoTSDT.101723396, DT.110476832, DT.91338629
NIA Mouse Gene IndexU007503
EC3.1.4.35
Consensus CDS ProjectCCDS39686.1
International Mouse Knockout Project StatusPde6h
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023391 VEGA Gene Model | MGI Sequence Detail 14343 C57BL/6J ±  kb
transcript OTTMUST00000056777 VEGA | MGI Sequence Detail 5940 Not Applicable 
polypeptide OTTMUSP00000027327 VEGA | MGI Sequence Detail 83 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(216 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006952 Retinal cGMP phosphodiesterase, gamma subunit
Protein Ontology PR:000012483 retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory