About   Help   FAQ
Due to maintenance, access to MGI may be intermittent 8:00 AM ET Wed, September 18.
3300005D01Rik Gene Detail
Summary
  • Symbol
    3300005D01Rik
  • Name
    RIKEN cDNA 3300005D01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925762
    NCBI Gene: 78512
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:5798657-5803240 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 3.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    84 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925762
lncRNA gene Chr17:5798657-5803242 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005686
lincRNA gene Chr17:2945511-2950052 (+)
A/J MGP_AJ_G0005673
lincRNA gene Chr17:2884076-2888601 (+)
AKR/J MGP_AKRJ_G0005652
lincRNA gene Chr17:2943169-2947686 (+)
BALB/cJ MGP_BALBcJ_G0005653
lincRNA gene Chr17:2845616-2850133 (+)
C3H/HeJ MGP_C3HHeJ_G0005600
lincRNA gene Chr17:2984009-2988520 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005810
lincRNA gene Chr17:3098605-3103219 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005167
lincRNA gene Chr17:2689776-2694494 (+)
CAST/EiJ MGP_CASTEiJ_G0005543
lincRNA gene Chr17:2993149-2999067 (+)
CBA/J MGP_CBAJ_G0005588
lincRNA gene Chr17:3240455-3244973 (+)
DBA/2J MGP_DBA2J_G0005606
lincRNA gene Chr17:2738362-2742874 (+)
FVB/NJ MGP_FVBNJ_G0005632
lincRNA gene Chr17:2779770-2784266 (+)
LP/J MGP_LPJ_G0005688
lincRNA gene Chr17:3073710-3079512 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005617
lincRNA gene Chr17:3080180-3086978 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005811
lincRNA gene Chr17:2973513-2978025 (+)
PWK/PhJ MGP_PWKPhJ_G0005489
lincRNA gene Chr17:2814021-2819007 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005408
lincRNA gene Chr17:2943676-2948238 (+)
WSB/EiJ MGP_WSBEiJ_G0005594
lincRNA gene Chr17:2933339-2937917 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096965 Ensembl Gene Model | MGI Sequence Detail 4584 C57BL/6J ±  kb
transcript ENSMUST00000181484 Ensembl | MGI Sequence Detail 1174 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/10/2019
MGI 6.14
The Jackson Laboratory