A930006K02Rik Gene Detail

Summary

• Symbol
  A930006K02Rik
• Name
  RIKEN cDNA A930006K02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925683
  NCBI Gene: 100503120
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:91261992-91267011 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 52.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925683	lncRNA gene	Chr16:91261913-91267016 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015328	unclassified non-coding RNA gene	Chr16:92470726-92476021 (+)
A/J	MGP_AJ_G0015303	unclassified non-coding RNA gene	Chr16:88156516-88161531 (+)
AKR/J	MGP_AKRJ_G0015266	unclassified non-coding RNA gene	Chr16:90812070-90817092 (+)
BALB/cJ	MGP_BALBcJ_G0015266	unclassified non-coding RNA gene	Chr16:88682239-88687230 (+)
C3H/HeJ	MGP_C3HHeJ_G0015090	unclassified non-coding RNA gene	Chr16:91382690-91387711 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015720	unclassified non-coding RNA gene	Chr16:95469802-95476963 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013462	unclassified non-coding RNA gene	Chr16:85853127-85858784 (+)
CAST/EiJ	MGP_CASTEiJ_G0014641	unclassified non-coding RNA gene	Chr16:91943833-91950492 (+)
CBA/J	MGP_CBAJ_G0015069	unclassified non-coding RNA gene	Chr16:99538168-99543137 (+)
DBA/2J	MGP_DBA2J_G0015164	unclassified non-coding RNA gene	Chr16:88054773-88059878 (+)
FVB/NJ	MGP_FVBNJ_G0015171	unclassified non-coding RNA gene	Chr16:87183618-87188635 (+)
LP/J	MGP_LPJ_G0015244	unclassified non-coding RNA gene	Chr16:92184687-92190278 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015197	unclassified non-coding RNA gene	Chr16:104093425-104098805 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015760	unclassified non-coding RNA gene	Chr16:91337123-91342147 (+)
PWK/PhJ	MGP_PWKPhJ_G0014431	unclassified non-coding RNA gene	Chr16:88231625-88236872 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014748	unclassified non-coding RNA gene	Chr16:91572750-91579165 (+)

Homology

• Gene Tree
  A930006K02Rik
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  65 phenotype references
  

• All Mutations and Alleles
  6
• Spontaneous
  1
• Targeted
  4
• Genomic Mutations
  6 involving A930006K02Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000084866 (Evidence)
• NCBI Gene
  100503120

Representative Sequences			Length	Strain/Species
genomic	100503120	NCBI Gene Model | MGI Sequence Detail	5020	C57BL/6J
transcript	NR_077219	RefSeq | MGI Sequence Detail	778	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 76

  Diseases 4

  Phenotypes 65
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for A930006K02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139389	Chr16:91261878-91261907 (+)	-99 bp
Tssr139390	Chr16:91261909-91261920 (+)	-77 bp
Tssr139391	Chr16:91261921-91261939 (+)	-62 bp
Tssr139392	Chr16:91261967-91261999 (+)	-9 bp