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Pym1 Gene Detail
Summary
  • Symbol
    Pym1
  • Name
    PYM homolog 1, exon junction complex associated factor
  • Synonyms
    A030010B05Rik, Pym, PYM Protein, Wibg
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925678
    NCBI Gene: 78428
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:128747889-128766564 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 77.14 cM, cytoband D3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    97 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925678
protein coding gene Chr10:128747879-128766568 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017881
protein coding gene Chr10:132537354-132556151 (+)
A/J MGP_AJ_G0017856
protein coding gene Chr10:127200944-127220480 (+)
AKR/J MGP_AKRJ_G0017819
protein coding gene Chr10:130917868-130936510 (+)
BALB/cJ MGP_BALBcJ_G0017820
protein coding gene Chr10:127564836-127584180 (+)
C3H/HeJ MGP_C3HHeJ_G0017643
protein coding gene Chr10:131085532-131105196 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018275
protein coding gene Chr10:137004367-137024258 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015953
protein coding gene Chr10:121112450-121132053 (+)
CAST/EiJ MGP_CASTEiJ_G0017204
protein coding gene Chr10:131810668-131832404 (+)
CBA/J MGP_CBAJ_G0017613
protein coding gene Chr10:142592866-142616240 (+)
DBA/2J MGP_DBA2J_G0017719
protein coding gene Chr10:126260048-126279076 (+)
FVB/NJ MGP_FVBNJ_G0017714
protein coding gene Chr10:125183467-125202162 (+)
LP/J MGP_LPJ_G0017793
protein coding gene Chr10:133112569-133132825 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017742
protein coding gene Chr10:145153402-145175501 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018315
protein coding gene Chr10:131023067-131042754 (+)
PWK/PhJ MGP_PWKPhJ_G0016989
protein coding gene Chr10:126523885-126543535 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016778
protein coding gene Chr10:130134341-130152931 (+)
WSB/EiJ MGP_WSBEiJ_G0017263
protein coding gene Chr10:131246621-131267360 (+)



Homology
more
  • Human Ortholog
    PYM1, PYM homolog 1, exon junction complex associated factor
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PYM1, PYM homolog 1, exon junction complex associated factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PYM, WIBG
  • Links
    NCBI Gene ID: 84305
    neXtProt AC: NX_Q9BRP8
    UniProt: Q9BRP8

  • Chr Location
    12q13.2; chr12:55901413-55927913 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064030 Ensembl Gene Model | MGI Sequence Detail 18676 C57BL/6J ±  kb
transcript ENSMUST00000163377 Ensembl | MGI Sequence Detail 1158 Not Applicable  
polypeptide ENSMUSP00000129789 Ensembl | MGI Sequence Detail 203 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 2
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory