9530046B11Rik Gene Detail

Summary

• Symbol
  9530046B11Rik
• Name
  RIKEN cDNA 9530046B11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925671
  NCBI Gene: 78421
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:117253283-117256788 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925671	lncRNA gene	Chr5:117253283-117256788 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004157	antisense lncRNA gene	Chr5:120172738-120176240 (+)
A/J	MGP_AJ_G0004136	antisense lncRNA gene	Chr5:115304913-115308369 (+)
AKR/J	MGP_AKRJ_G0004117	antisense lncRNA gene	Chr5:119021600-119027489 (+)
BALB/cJ	MGP_BALBcJ_G0004122	antisense lncRNA gene	Chr5:116721465-116725396 (+)
C3H/HeJ	MGP_C3HHeJ_G0004071	antisense lncRNA gene	Chr5:119540911-119544398 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004271	antisense lncRNA gene	Chr5:124745562-124749033 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003747	antisense lncRNA gene	Chr5:110067200-110069227 (+)
CAST/EiJ	MGP_CASTEiJ_G0004032	antisense lncRNA gene	Chr5:118545123-118548625 (+)
CBA/J	MGP_CBAJ_G0004065	antisense lncRNA gene	Chr5:129563975-129567462 (+)
DBA/2J	MGP_DBA2J_G0004080	antisense lncRNA gene	Chr5:115401335-115404820 (+)
FVB/NJ	MGP_FVBNJ_G0004096	antisense lncRNA gene	Chr5:114253210-114256693 (+)
LP/J	MGP_LPJ_G0004158	antisense lncRNA gene	Chr5:120682976-120688135 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004086	antisense lncRNA gene	Chr5:133807564-133811049 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004268	antisense lncRNA gene	Chr5:118540519-118545347 (+)
PWK/PhJ	MGP_PWKPhJ_G0003986	antisense lncRNA gene	Chr5:114084508-114088004 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003929	antisense lncRNA gene	Chr5:116110226-116113711 (+)
WSB/EiJ	MGP_WSBEiJ_G0004069	antisense lncRNA gene	Chr5:119121955-119125438 (+)

Homology

• Gene Tree
  9530046B11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9530046B11Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086047 (Evidence)
• NCBI Gene
  78421

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086047	Ensembl Gene Model | MGI Sequence Detail	3506	C57BL/6J
transcript	ENSMUST00000149413	Ensembl | MGI Sequence Detail	1157	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573