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Lce6a Gene Detail
Summary
  • Symbol
    Lce6a
  • Name
    late cornified envelope 6A
  • Synonyms
    2210420J11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925632
    NCBI Gene: 78382
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:92620081-92621660 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 40.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925632
protein coding gene Chr3:92604763-92621660 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027505
protein coding gene Chr3:93072193-93073772 (-)
A/J MGP_AJ_G0027472
protein coding gene Chr3:90146001-90147580 (-)
AKR/J MGP_AKRJ_G0027437
protein coding gene Chr3:92260558-92262137 (-)
BALB/cJ MGP_BALBcJ_G0027480
protein coding gene Chr3:89959148-89960717 (-)
C3H/HeJ MGP_C3HHeJ_G0027220
protein coding gene Chr3:92478052-92479631 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027924
protein coding gene Chr3:96620595-96622174 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025273
protein coding gene Chr3:86774619-86776199 (-)
CAST/EiJ MGP_CASTEiJ_G0026667
protein coding gene Chr3:91897939-91899511 (-)
CBA/J MGP_CBAJ_G0027194
protein coding gene Chr3:99942384-99943963 (-)
DBA/2J MGP_DBA2J_G0027332
protein coding gene Chr3:89466803-89468372 (-)
FVB/NJ MGP_FVBNJ_G0027300
protein coding gene Chr3:87636964-87638543 (-)
LP/J MGP_LPJ_G0027440
protein coding gene Chr3:94291997-94293576 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027325
protein coding gene Chr3:106214953-106216507 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027983
protein coding gene Chr3:91993739-91995308 (-)
PWK/PhJ MGP_PWKPhJ_G0026400
protein coding gene Chr3:89350756-89352346 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026219
protein coding gene Chr3:90323636-90325202 (-)
WSB/EiJ MGP_WSBEiJ_G0026750
protein coding gene Chr3:92371524-92373098 (-)



Homology
more
  • Human Ortholog
    LCE6A, late cornified envelope 6A
  • Human Ortholog
    LCE6A, late cornified envelope 6A
    Orthology source: HGNC
  • Synonyms
    C1orf44
  • Links
    NCBI Gene ID: 448835
    neXtProt AC: NX_A0A183
    UniProt: A0A183

  • Chr Location
    1q21.3; chr1:152842830-152844211 (+)  GRCh38.p7

  • HCOP
    human homology predictions: LCE6A
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086848 Ensembl Gene Model | MGI Sequence Detail 1580 C57BL/6J ±  kb
transcript ENSMUST00000170676 Ensembl | MGI Sequence Detail 485 Not Applicable  
polypeptide ENSMUSP00000128725 Ensembl | MGI Sequence Detail 81 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR031716 Late cornified envelope protein 6A
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Diseases 1
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory