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2500002B13Rik Gene Detail
Summary
  • Symbol
    2500002B13Rik
  • Name
    RIKEN cDNA 2500002B13 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925603
    NCBI Gene: 78353
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:57940997-57963296 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 29.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925603
 lncRNA gene Chr8:57940551-57963975 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007328
 lincRNA gene Chr8:57216745-57242562 (+)
A/J MGP_AJ_G0007326
 lincRNA gene Chr8:54801989-54825315 (+)
AKR/J MGP_AKRJ_G0007297
 lincRNA gene Chr8:56432178-56452716 (+)
BALB/cJ MGP_BALBcJ_G0007304
 lincRNA gene Chr8:55125083-55147048 (+)
C3H/HeJ MGP_C3HHeJ_G0007247
 lincRNA gene Chr8:57086451-57108274 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007474
 lincRNA gene Chr8:59420326-59443862 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006672
 lincRNA gene Chr8:50353652-50376716 (+)
CAST/EiJ MGP_CASTEiJ_G0007149
 lincRNA gene Chr8:56476392-56497202 (+)
CBA/J MGP_CBAJ_G0007230
 lincRNA gene Chr8:61536188-61560012 (+)
DBA/2J MGP_DBA2J_G0007252
 lincRNA gene Chr8:54610621-54631990 (+)
FVB/NJ MGP_FVBNJ_G0007273
 lincRNA gene Chr8:53968808-53990014 (+)
LP/J MGP_LPJ_G0007333
 lincRNA gene Chr8:57225229-57248780 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007250
 lincRNA gene Chr8:63148855-63172077 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007476
 lincRNA gene Chr8:56665743-56691351 (+)
PWK/PhJ MGP_PWKPhJ_G0007091
 lincRNA gene Chr8:53925223-53945879 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006999
 lincRNA gene Chr8:55533590-55567143 (+)
WSB/EiJ MGP_WSBEiJ_G0007209
 lincRNA gene Chr8:56916492-56938439 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display increased sensitivity to of the heart induced stress and reduced respiration in heart mitochondria.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      46
    • RefSeq
      3
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 78353 NCBI Gene Model | MGI Sequence Detail 22300 C57BL/6J ±  kb
    transcript NR_126553 RefSeq | MGI Sequence Detail 808 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 1
    References
    more
    • Summaries
      All 19
      Phenotypes 8
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:311513 Sato M, et al., The lncRNA Caren antagonizes heart failure by inactivating DNA damage response and activating mitochondrial biogenesis. Nat Commun. 2021 May 5;12(1):2529
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory