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2500002B13Rik Gene Detail
Summary
  • Symbol
    2500002B13Rik
  • Name
    RIKEN cDNA 2500002B13 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925603
    NCBI Gene: 78353
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:57940997-57963296 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 29.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925603
lncRNA gene Chr8:57940551-57963975 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007328
lincRNA gene Chr8:57216745-57242562 (+)
A/J MGP_AJ_G0007326
lincRNA gene Chr8:54801989-54825315 (+)
AKR/J MGP_AKRJ_G0007297
lincRNA gene Chr8:56432178-56452716 (+)
BALB/cJ MGP_BALBcJ_G0007304
lincRNA gene Chr8:55125083-55147048 (+)
C3H/HeJ MGP_C3HHeJ_G0007247
lincRNA gene Chr8:57086451-57108274 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007474
lincRNA gene Chr8:59420326-59443862 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006672
lincRNA gene Chr8:50353652-50376716 (+)
CAST/EiJ MGP_CASTEiJ_G0007149
lincRNA gene Chr8:56476392-56497202 (+)
CBA/J MGP_CBAJ_G0007230
lincRNA gene Chr8:61536188-61560012 (+)
DBA/2J MGP_DBA2J_G0007252
lincRNA gene Chr8:54610621-54631990 (+)
FVB/NJ MGP_FVBNJ_G0007273
lincRNA gene Chr8:53968808-53990014 (+)
LP/J MGP_LPJ_G0007333
lincRNA gene Chr8:57225229-57248780 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007250
lincRNA gene Chr8:63148855-63172077 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007476
lincRNA gene Chr8:56665743-56691351 (+)
PWK/PhJ MGP_PWKPhJ_G0007091
lincRNA gene Chr8:53925223-53945879 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006999
lincRNA gene Chr8:55533590-55567143 (+)
WSB/EiJ MGP_WSBEiJ_G0007209
lincRNA gene Chr8:56916492-56938439 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotypes from 2 alleles in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display increased sensitivity to of the heart induced stress and reduced respiration in heart mitochondria.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    • All Sequences
    • RefSeq
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 78353 NCBI Gene Model | MGI Sequence Detail 22300 C57BL/6J ±  kb
    transcript NR_126553 RefSeq | MGI Sequence Detail 808 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 1
    References
    more
    • Summaries
      All 18
      Phenotypes 7
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:311513 Sato M, et al., The lncRNA Caren antagonizes heart failure by inactivating DNA damage response and activating mitochondrial biogenesis. Nat Commun. 2021 May 5;12(1):2529

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    last database update
    11/22/2022
    MGI 6.22
    The Jackson Laboratory