About   Help   FAQ
Hist3h2ba Gene Detail
Summary
  • Symbol
    Hist3h2ba
  • Name
    histone cluster 3, H2ba
  • Synonyms
    1500011O09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925553
    NCBI Gene: 78303
  • Member of
    Hist3 cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58948911-58949372 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 36.38 cM, cytoband B2
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925553
protein coding gene Chr11:58948911-58949533 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018383
protein coding gene Chr11:58730657-58731270 (+)
A/J MGP_AJ_G0018352
protein coding gene Chr11:56490432-56491042 (+)
AKR/J MGP_AKRJ_G0018322
protein coding gene Chr11:58391106-58391719 (+)
BALB/cJ MGP_BALBcJ_G0018323
protein coding gene Chr11:56857602-56858215 (+)
C3H/HeJ MGP_C3HHeJ_G0018136
protein coding gene Chr11:58277892-58278512 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018775
protein coding gene Chr11:60606984-60607597 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016420
protein coding gene Chr11:53763732-53764346 (+)
CAST/EiJ MGP_CASTEiJ_G0017694
protein coding gene Chr11:58395635-58396218 (+)
CBA/J MGP_CBAJ_G0018110
protein coding gene Chr11:63251239-63251853 (+)
DBA/2J MGP_DBA2J_G0018219
protein coding gene Chr11:56167904-56168749 (+)
FVB/NJ MGP_FVBNJ_G0018210
protein coding gene Chr11:55815592-55816193 (+)
LP/J MGP_LPJ_G0018292
protein coding gene Chr11:59346647-59347260 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018234
protein coding gene Chr11:64406246-64406859 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018816
protein coding gene Chr11:58395814-58396427 (+)
PWK/PhJ MGP_PWKPhJ_G0017464
protein coding gene Chr11:56753261-56753905 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017257
protein coding gene Chr11:58203676-58204291 (+)
WSB/EiJ MGP_WSBEiJ_G0017744
protein coding gene Chr11:58080970-58081583 (+)



Homology
more
  • Human Ortholog
    HIST1H2BD, histone cluster 1 H2B family member d
  • Vertebrate Orthologs
    7
  • Human Ortholog
    HIST1H2BD, histone cluster 1 H2B family member d
    Orthology source: HomoloGene
  • Synonyms
    dJ221C16.6, H2B.1B, H2B/a, H2B/b, H2BFA, H2BFB, H2BFG, H2BFH, H2BFK, H2BFL, H2B/g, H2B/h, H2B/k, H2B/l, HIRIP2, HIST1H2BC, HIST1H2BE, HIST1H2BF, HIST1H2BG, HIST1H2BI
  • Links
    NCBI Gene ID: 3017
    neXtProt AC: NX_P58876, NX_P62807
    UniProt: P58876

  • Chr Location
    6p22.2; chr6:26157985-26171349 (+)  GRCh38.p7

  • Human Ortholog
    HIST3H2BA, histone cluster 3 H2B family member a (pseudogene)
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 337872

  • Chr Location
    1q42.13; chr1:228464170-228464575 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78303 NCBI Gene Model | MGI Sequence Detail 462 C57BL/6J ±  kb
transcript NM_030082 RefSeq | MGI Sequence Detail 462 C57BL/6  
polypeptide Q9D2U9 UniProt | EBI | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 33
    Genomic 1
    cDNA 32

    Microarray probesets 2
Other
Accession IDs
less
MGI:2144144
References
more
  • Summaries
    All 30
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:237465 Cheverud JM, et al., Fine-mapping quantitative trait loci affecting murine external ear tissue regeneration in the LG/J by SM/J advanced intercross line. Heredity (Edinb). 2014 May;112(5):508-18

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory