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Rps27a
Gene Detail
Symbol

Name
ID
Rps27a
ribosomal protein S27A
MGI:1925544
Synonyms
0610006J14Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
16.79 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr11:29545846-29548109 bp, - strand
From VEGA annotation of GRCm38

  2264 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37715  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 2 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RPS27A
Protein SuperFamily: ribosomal protein S27Ae
Gene Tree: Rps27a

Human
homologs
RPS27A, ribosomal protein S27a
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 6233
neXtProt AC: NX_P62979

Human Synonyms: CEP80, HEL112, S27A, UBA80, UBC, UBCEP1, UBCEP80

Human Chr (Location): 2p16; chr2:55231903-55235853 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(17) : Gene trapped(14) Targeted(3)
Incidental mutations (data from APF )
Interactions
Rps27a interacts with 7 markers (Mir214, Mir409, Mir499, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process translation
Component cytoplasm, cytosolic small ribosomal subunit, ...
Function metal ion binding, poly(A) RNA binding, ...
External Resources: FuncBase
Expression
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rps27a ; ZFIN rps27a    NEW 
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000005330 (Evidence)
Ensembl Gene Model ENSMUSG00000020460 (Evidence)
Entrez Gene 78294 (Evidence)
DFCI TC1573154
Consensus CDS Project CCDS24497.1
International Mouse Phenotyping Consortium Status Rps27a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005330 VEGA Gene Model | MGI Sequence Detail 2264 C57BL/6J ±  kb
transcript OTTMUST00000011887 VEGA | MGI Sequence Detail 791 Not Applicable 
polypeptide OTTMUSP00000005506 VEGA | MGI Sequence Detail 156 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(27 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002906 Ribosomal protein S27a
InterPro IPR011332 Ribosomal protein, zinc-binding domain
InterPro IPR000626 Ubiquitin
InterPro IPR019954 Ubiquitin conserved site
InterPro IPR019956 Ubiquitin subgroup
Protein Ontology PR:000014271 ubiquitin-40S ribosomal protein S27a
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory