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4921539H07Rik Gene Detail
Summary
  • Symbol
    4921539H07Rik
  • Name
    RIKEN cDNA 4921539H07 gene
  • Synonyms
    Gm2668
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925506
    NCBI Gene: 78256
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:58117053-58167616 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    229 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925506
lncRNA gene Chr3:58117053-58167616 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006195
lincRNA gene Chr3:56932848-56983399 (+)
A/J MGP_AJ_G0006187
lincRNA gene Chr3:55173174-55224439 (+)
AKR/J MGP_AKRJ_G0006163
lincRNA gene Chr3:56310499-56361006 (+)
BALB/cJ MGP_BALBcJ_G0006163
lincRNA gene Chr3:54986634-55037682 (+)
C3H/HeJ MGP_C3HHeJ_G0006113
lincRNA gene Chr3:56520137-56570429 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006326
lincRNA gene Chr3:59039207-59090068 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005634
lincRNA gene Chr3:51528188-51579980 (+)
CAST/EiJ MGP_CASTEiJ_G0006047
lincRNA gene Chr3:56681424-56737773 (+)
CBA/J MGP_CBAJ_G0006098
lincRNA gene Chr3:61000050-61052812 (+)
DBA/2J MGP_DBA2J_G0006117
lincRNA gene Chr3:54672019-54725700 (+)
FVB/NJ MGP_FVBNJ_G0006141
lincRNA gene Chr3:53642386-53695344 (+)
LP/J MGP_LPJ_G0006200
lincRNA gene Chr3:57684985-57737188 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006131
lincRNA gene Chr3:65120348-65174598 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006330
lincRNA gene Chr3:56264815-56315504 (+)
PWK/PhJ MGP_PWKPhJ_G0005992
lincRNA gene Chr3:54314984-54371258 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005901
lincRNA gene Chr3:55933590-55991965 (+)
WSB/EiJ MGP_WSBEiJ_G0006094
lincRNA gene Chr3:56341548-56392523 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104586 Ensembl Gene Model | MGI Sequence Detail 50564 C57BL/6J ±  kb
transcript ENSMUST00000197200 Ensembl | MGI Sequence Detail 2985 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:3780837
References
more
  • Summaries
    All 11
    Diseases 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory