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Trappc6b Gene Detail
Summary
  • Symbol
    Trappc6b
  • Name
    trafficking protein particle complex 6B
  • Synonyms
    5830498C14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925482
    NCBI Gene: 78232
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr12:59043092-59061472 bp, - strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      18381 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 25.99 cM, cytoband C2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    TRAPPC6B, trafficking protein particle complex 6B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRAPPC6B, trafficking protein particle complex 6B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TPC6
  • Links
    NCBI Gene ID: 122553
    neXtProt AC: NX_Q86SZ2
    UniProt: Q86SZ2

  • Chr Location
    14q21.1; chr14:39147811-39170430 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 78232 NCBI Gene Model | MGI Sequence Detail 18381 C57BL/6J ±  kb
transcript NM_001306218 RefSeq | MGI Sequence Detail 1539 C57BL/6  
polypeptide Q9D289 UniProt | EBI | MGI Sequence Detail 158 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    227 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000016618 trafficking protein particle complex subunit 6B
  • InterPro Domains
    IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily
    IPR007194 Transport protein particle (TRAPP) component
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
Other
Accession IDs
less
MGI:2139485
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/05/2017
MGI 6.11
The Jackson Laboratory