4930594M22Rik Gene Detail

Summary

• Symbol
  4930594M22Rik
• Name
  RIKEN cDNA 4930594M22 gene
• Synonyms
  F930011C10Rik, Gm15735

• Feature Type
  lncRNA gene
• IDs
  MGI:1925478
  NCBI Gene: 105245866
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:123150442-123166854 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 66.04 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925478	lncRNA gene	Chr14:123150442-123174881 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015288	unclassified non-coding RNA gene	Chr14:120830989-120856372 (+)
A/J	MGP_AJ_G0015262	unclassified non-coding RNA gene	Chr14:116156163-116180601 (+)
AKR/J	MGP_AKRJ_G0015225	unclassified non-coding RNA gene	Chr14:119904671-119929109 (+)
BALB/cJ	MGP_BALBcJ_G0015226	unclassified non-coding RNA gene	Chr14:116702777-116727215 (+)
C3H/HeJ	MGP_C3HHeJ_G0015050	unclassified non-coding RNA gene	Chr14:119803248-119827687 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015681	unclassified non-coding RNA gene	Chr14:125481614-125506053 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013422	unclassified non-coding RNA gene	Chr14:111970586-111997131 (+)
CAST/EiJ	MGP_CASTEiJ_G0014601	unclassified non-coding RNA gene	Chr14:117695607-117720368 (+)
CBA/J	MGP_CBAJ_G0015030	unclassified non-coding RNA gene	Chr14:130244679-130269117 (+)
DBA/2J	MGP_DBA2J_G0015124	unclassified non-coding RNA gene	Chr14:116006267-116030976 (+)
FVB/NJ	MGP_FVBNJ_G0015131	unclassified non-coding RNA gene	Chr14:114361042-114385411 (+)
LP/J	MGP_LPJ_G0015204	unclassified non-coding RNA gene	Chr14:121737163-121761412 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015157	unclassified non-coding RNA gene	Chr14:135216692-135241117 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015720	unclassified non-coding RNA gene	Chr14:119489453-119513931 (+)
PWK/PhJ	MGP_PWKPhJ_G0014393	unclassified non-coding RNA gene	Chr14:113056984-113082513 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014180	unclassified non-coding RNA gene	Chr14:115677361-115702441 (+)
WSB/EiJ	MGP_WSBEiJ_G0014708	unclassified non-coding RNA gene	Chr14:120176789-120201225 (+)

Homology

• Gene Tree
  4930594M22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000075463 (Evidence)
• NCBI Gene
  105245866

Representative Sequences			Length	Strain/Species
genomic	105245866	NCBI Gene Model | MGI Sequence Detail	16413	C57BL/6J
transcript	NR_155286	RefSeq | MGI Sequence Detail	3632	ZRU/MplStud
polypeptide	Q3TZ26	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3605625, MGI:3783177

References

• Summaries
  All 19

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930594M22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127369	Chr14:123150397-123150426 (+)	-30 bp
Tssr127370	Chr14:123150430-123150463 (+)	5 bp
Tssr127371	Chr14:123150481-123150494 (+)	46 bp
Tssr127372	Chr14:123150604-123150630 (+)	175 bp