4930578N18Rik Gene Detail

Summary

• Symbol
  4930578N18Rik
• Name
  RIKEN cDNA 4930578N18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925465
  NCBI Gene: 78215
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:75919501-75952974 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  967 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925465	lncRNA gene	Chr16:75919438-75952982 (+)
129S1/SvImJ	ENSMUSG00200015845	lncRNA gene	Chr16:72798042-72831518 (+)
A/J	ENSMUSG00195023279	lncRNA gene	Chr16:72570762-72595241 (+)
AKR/J	ENSMUSG00220017789	lncRNA gene	Chr16:72756801-72790278 (+)
BALB/cJ	ENSMUSG00180002108	lncRNA gene	Chr16:72656388-72689865 (+)
C3H/HeJ	ENSMUSG00175009352	lncRNA gene	Chr16:72929790-72963266 (+)
C57BL/6NJ	ENSMUSG00215001708	lncRNA gene	Chr16:72766918-72800400 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007768	lncRNA gene	Chr16:72640227-72667160 (+)
CBA/J	ENSMUSG00210019843	lncRNA gene	Chr16:72884628-72918101 (+)
DBA/2J	ENSMUSG00185005313	lncRNA gene	Chr16:72805640-72830119 (+)
FVB/NJ	ENSMUSG00205014566	lncRNA gene	Chr16:72672624-72706099 (+)
JF1/MsJ	ENSUMUG00000014639	lncRNA gene	Chr16:73007596-73031627 (+)
LP/J	ENSMUSG00230020202	lncRNA gene	Chr16:75373104-75406580 (+)
NOD/ShiLtJ	ENSMUSG00190011702	lncRNA gene	Chr16:72810941-72844416 (+)
NZO/HlLtJ	ENSMUSG00225029597	lncRNA gene	Chr16:78603967-78628439 (+)
PWK/PhJ	ENSLUMG00010005397	lncRNA gene	Chr16:72655904-72679858 (+)
SPRET/EiJ	ENSMSPG00010015578	lncRNA gene	Chr16:73500457-73524826 (+)
WSB/EiJ	ENSIUOG00005017472	lncRNA gene	Chr16:73044351-73068762 (+)

Homology

• Gene Tree
  4930578N18Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  14 phenotype references
  

• All Mutations and Alleles
  28
• Gene trapped
  23
• Targeted
  4
• Genomic Mutations
  5 involving 4930578N18Rik
• Find Mice (IMSR)
  91 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000116695 (Evidence)
• NCBI Gene
  78215

Representative Sequences			Length	Strain/Species
genomic	78215	NCBI Gene Model | MGI Sequence Detail	33474	C57BL/6J
transcript	NR_040575	RefSeq | MGI Sequence Detail	511	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 22

  Diseases 1

  Phenotypes 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for 4930578N18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139013	Chr16:75919495-75919517 (+)	5 bp
Tssr4944	Chr16:75929348-75929351 (+)	9,849 bp