4930539E08Rik Gene Detail

Summary

• Symbol
  4930539E08Rik
• Name
  RIKEN cDNA 4930539E08 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1925441
  NCBI Gene: 207819
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr17:28896397-28915324 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    18928 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 15.03 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  C6orf222, chromosome 6 open reading frame 222

• Vertebrate Orthologs
  7

• Human Ortholog
  C6orf222, chromosome 6 open reading frame 222
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:33769

  NCBI Gene ID: 389384

  neXtProt AC: NX_P0C671

  UniProt: P0C671

  
  
• Chr Location
  6p21.31; chr6:36315757-36337015 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 52098
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: C6orf222
• Gene Tree
  4930539E08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• Assay Results
  83
• Tissues
  18
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 4930539E08Rik interacts with 279 markers (Mir7-1, Mir22, Mir24-1, ...) View All

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  4
• UniProt
  2
• CCDS
  CCDS28586.1

• VEGA
  OTTMUSG00000031642 (Evidence)
• Ensembl
  ENSMUSG00000048905 (Evidence)
• NCBI Gene
  207819 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000031642	VEGA Gene Model | MGI Sequence Detail	18928	C57BL/6J
transcript	OTTMUST00000078381	VEGA | MGI Sequence Detail	4592	Not Applicable
polypeptide	OTTMUSP00000041680	VEGA | MGI Sequence Detail	669	Not Applicable

Polymorphisms

• SNPs within 2kb
  140 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR031362 Uncharacterised protein C6orf222

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 20

  Developmental Gene Expression 2

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9