Tmem50b
Gene Detail

Symbol Name ID

Tmem50b transmembrane protein 50B MGI:1925225

Synonyms

B230114J08Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 16

53.11 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr16:91574503-91597800 bp, - strand From VEGA annotation of GRCm38   23298 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:21234  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 2 dog; 1 chicken

Gene Tree: Tmem50b

Human homologs

Human Homolog		TMEM50B, transmembrane protein 50B
NCBI Gene ID		757
neXtProt AC		NX_P56557
Human Synonyms		C21orf4, HCVP7TP3
Human Chr (Location)		21q22.11; chr21:34804793-34852316 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(19) : Targeted(3) Gene trapped(16)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Component

endoplasmic reticulum, integral to membrane, ...

External Resources: FuncBase

Expression

Literature Summary: (6 records)
Data Summary: Results (539)    Tissues (204)    Images (71)
Theiler Stages: 11, 13, 15, 17, 20, 22, 23, 26, 28

Assay Type	Results
RNA in situ	523
RT-PCR	16

cDNA source data(105)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(106) cDNA(105) Primer pair(1)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000019970 (Evidence)
Ensembl Gene Model	ENSMUSG00000022964 (Evidence)
Entrez Gene	77975 (Evidence)
UniGene	290341
DFCI	TC1572496
DoTS	DT.110727819, DT.530789
NIA Mouse Gene Index	U037301
Consensus CDS Project	CCDS28328.1
International Mouse Knockout Project Status	Tmem50b

Sequences

Length	Strain/Species
genomic	OTTMUSG00000019970	VEGA Gene Model | MGI Sequence Detail	23298	C57BL/6J
transcript	OTTMUST00000047595	VEGA | MGI Sequence Detail	2347	Not Applicable
polypeptide	OTTMUSP00000021556	VEGA | MGI Sequence Detail	158	Not Applicable

All sequences(45) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(39 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR007919	Uncharacterised protein family UPF0220
Protein Ontology	PR:000031584	transmembrane protein 50B

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)

Other accession IDs

MGI:2146537, MGI:2146555